ENSGALG00000003522


Gallus gallus

Features
Gene ID: ENSGALG00000003522
  
Biological name :RBBP4
  
Synonyms : histone-binding protein RBBP4 / RBBP4
  
Possible biological names infered from orthology : Q09028 / Q60972 / RB binding protein 4, chromatin remodeling factor
  
Species: Gallus gallus
  
Chr. number: 23
Strand: 1
Band:
Gene start: 5242578
Gene end: 5249616
  
Corresponding Affymetrix probe sets: Gga.1029.1.S1_a_at (Chicken Array)   Gga.1029.2.S1_a_at (Chicken Array)   Gga.1029.3.S1_at (Chicken Array)   Gga.1029.3.S1_a_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000005565
NCBI entrez gene - 395658     See in Manteia.
RefSeq - NM_204852
RefSeq - XM_015297601
RefSeq Peptide - NP_990183
swissprot - F2Z4M0
Ensembl - ENSGALG00000003522
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rbbp4ENSDARG00000029058Danio rerio
 RBBP4ENSG00000162521Homo sapiens
 Rbbp4ENSMUSG00000057236Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
RBBP7 / histone-binding protein RBBP7 / Q60973* / Q16576* / RB binding protein 7, chromatin remodeling factor* / retinoblastoma binding protein 7, chromatin remodeling factor*ENSGALG0000001654689


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR020472  G-protein beta WD-40 repeat
 IPR022052  Histone-binding protein RBBP4, N-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006335 DNA replication-dependent nucleosome assembly IEA
 biological_processGO:0006336 DNA replication-independent nucleosome assembly IEA
 biological_processGO:0006338 chromatin remodeling IEA
 biological_processGO:0031497 chromatin assembly IEA
 cellular_componentGO:0000790 nuclear chromatin IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016581 NuRD complex IEA
 cellular_componentGO:0016589 NURF complex IEA
 cellular_componentGO:0032991 protein-containing complex IEA
 cellular_componentGO:0033186 CAF-1 complex IEA
 cellular_componentGO:0035098 ESC/E(Z) complex IEA
 molecular_functionGO:0008094 DNA-dependent ATPase activity IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA


Pathways (from Reactome)
Pathway description
G0 and Early G1
PRC2 methylates histones and DNA
Oxidative Stress Induced Senescence
Deposition of new CENPA-containing nucleosomes at the centromere
Regulation of TP53 Activity through Acetylation
RNA Polymerase I Transcription Initiation
Regulation of PTEN gene transcription
Transcriptional Regulation by E2F6


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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