ENSDARG00000029331


Danio rerio

Features
Gene ID: ENSDARG00000029331
  
Biological name :atxn7l3
  
Synonyms : ataxin 7-like 3 / atxn7l3
  
Possible biological names infered from orthology : A2AWT3 / ataxin 7 like 3B / Ataxin-7-like protein 3 / ATXN7L3B / Q14CW9 / Q3UD01 / Q96GX2
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 20025709
Gene end: 20040636
  
Corresponding Affymetrix probe sets: Dr.20512.1.A1_at (Zebrafish Array)   NM_001040341_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000094893
NCBI entrez gene - 368510     See in Manteia.
RefSeq - NM_001040341
RefSeq Peptide - NP_001035431
swissprot - F1QMW7
ZFIN ID - ZDB-GENE-030616-253
Ensembl - ENSDARG00000029331
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q14CW9ENSG00000087152Homo sapiens
 Q96GX2ENSG00000253719Homo sapiens
 A2AWT3ENSMUSG00000059995Mus musculus
 Q3UD01ENSMUSG00000074748Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
si:dkeyp-118b1.2 / A2AWT3* / Q14CW9* / Q3UD01* / Q96GX2* / ATXN7L3* / ATXN7L3B* / ataxin 7 like 3* / ataxin 7 like 3B* / Ataxin-7-like protein 3 *ENSDARG0000007913143


Protein motifs (from Interpro)
Interpro ID Name
 IPR013243  SCA7 domain
 IPR013246  SAGA complex, Sgf11 subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0016578 histone deubiquitination IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000124 SAGA complex IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0071819 DUBm complex IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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