ENSMUSG00000059995


Mus musculus

Features
Gene ID: ENSMUSG00000059995
  
Biological name :Atxn7l3
  
Synonyms : A2AWT3 / Ataxin-7-like protein 3 / Atxn7l3
  
Possible biological names infered from orthology : ataxin 7 like 3 / Q14CW9
  
Species: Mus musculus
  
Chr. number: 11
Strand: -1
Band: D
Gene start: 102289300
Gene end: 102296631
  
Corresponding Affymetrix probe sets: 10391612 (MoGene1.0st)   1435019_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000102750
Ensembl peptide - ENSMUSP00000121917
Ensembl peptide - ENSMUSP00000122610
Ensembl peptide - ENSMUSP00000072967
Ensembl peptide - ENSMUSP00000102752
NCBI entrez gene - 217218     See in Manteia.
MGI - MGI:3036270
RefSeq - NM_001098836
RefSeq - XM_006533045
RefSeq - XM_006533046
RefSeq - XM_006533047
RefSeq - XM_006533048
RefSeq - XM_017314484
RefSeq - NM_001098837
RefSeq Peptide - NP_001092306
RefSeq Peptide - NP_001092307
swissprot - F6RCN9
swissprot - A2AWT3
swissprot - Z4YN62
Ensembl - ENSMUSG00000059995
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 atxn7l3ENSDARG00000029331Danio rerio
 si:dkeyp-118b1.2ENSDARG00000079131Danio rerio
 Q14CW9ENSG00000087152Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Q3UD01 / Atxn7l3b / ataxin 7-like 3B / Q96GX2*ENSMUSG0000007474815


Protein motifs (from Interpro)
Interpro ID Name
 IPR013243  SCA7 domain
 IPR013246  SAGA complex, Sgf11 subunit


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006325 chromatin organization IEA
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0010390 histone monoubiquitination IEA
 biological_processGO:0016578 histone deubiquitination IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0000124 SAGA complex IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0071819 DUBm complex IEA
 molecular_functionGO:0003713 transcription coactivator activity IEA
 molecular_functionGO:0030374 nuclear receptor transcription coactivator activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002764 short tibia " reduced length of the medial and larger bone of the lower leg" [J:12736, pvb:Pierre Vanden Borre , Mouse Genome Informatics Curator]
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Allelic Composition: Atp6v1dtm1b(EUCOMM)Hmgu/Atp6v1dtm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Atp6v1dtm1b(EUCOMM)Hmgu/Tcp

 MP:0005621 abnormal cell physiology "aberration in the vital processes of the cell " [Stedman s Medical Dictionary:ISBN 0-683-40008-8, hdene:Howard Dene , Mouse Genome Informatics Curator]
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Allelic Composition: Nfe2l2tm1Ywk/Nfe2l2tm1Ywk
Genetic Background: B6.129X1-Nfe2l2tm1Ywk/J

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Atp6v1dtm1b(EUCOMM)Hmgu/Atp6v1dtm1b(EUCOMM)Hmgu
Genetic Background: C57BL/6N-Atp6v1dtm1b(EUCOMM)Hmgu/Tcp

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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