ENSDARG00000029533


Danio rerio

Features
Gene ID: ENSDARG00000029533
  
Biological name :rpl18
  
Synonyms : ribosomal protein L18 / rpl18
  
Possible biological names infered from orthology : P35980 / Q07020
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 16969086
Gene end: 16991808
  
Corresponding Affymetrix probe sets: Dr.5434.10.S1_at (Zebrafish Array)   NM_001003432_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000117845
Ensembl peptide - ENSDARP00000155219
Ensembl peptide - ENSDARP00000043172
Ensembl peptide - ENSDARP00000116844
NCBI entrez gene - 445038     See in Manteia.
RefSeq - NM_001003432
RefSeq Peptide - NP_001003432
swissprot - E9QF69
swissprot - F1QN76
swissprot - Q6DGL0
ZFIN ID - ZDB-GENE-040801-165
Ensembl - ENSDARG00000029533
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL18ENSG00000063177Homo sapiens
 Rpl18ENSMUSG00000059070Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000039  Ribosomal protein L18e
 IPR021131  Ribosomal protein L18e/L15P
 IPR021132  Ribosomal protein L18e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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