ENSDARG00000030022


Danio rerio

Features
Gene ID: ENSDARG00000030022
  
Biological name :nup188
  
Synonyms : nucleoporin 188 / nup188
  
Possible biological names infered from orthology : AL672142.1 / Gm28038 / Nucleoporin NUP188 homolog / Q5SRE5 / Q6ZQH8
  
Species: Danio rerio
  
Chr. number: 21
Strand: 1
Band:
Gene start: 4540127
Gene end: 4606386
  
Corresponding Affymetrix probe sets: Dr.10092.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000043430
NCBI entrez gene - 559225     See in Manteia.
RefSeq - XM_001922983
swissprot - E7EXJ6
ZFIN ID - ZDB-GENE-030131-7184
Ensembl - ENSDARG00000030022
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 NUP188ENSGALG00000043394Gallus gallus
 AL672142.1ENSG00000251184Homo sapiens
 NUP188ENSG00000095319Homo sapiens
 Gm28038ENSMUSG00000098794Mus musculus
 Nup188ENSMUSG00000052533Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR016024  Armadillo-type fold
 IPR018864  Nucleoporin Nup188


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006405 RNA export from nucleus IBA
 biological_processGO:0006606 protein import into nucleus IBA
 cellular_componentGO:0044611 nuclear pore inner ring IBA
 molecular_functionGO:0017056 structural constituent of nuclear pore IBA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
Regulation of Glucokinase by Glucokinase Regulatory Protein
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of RNA binding proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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