ENSGALG00000043394


Gallus gallus

Features
Gene ID: ENSGALG00000043394
  
Biological name :NUP188
  
Synonyms : nucleoporin NUP188 homolog / NUP188
  
Possible biological names infered from orthology : AL672142.1 / Gm28038 / nucleoporin 188 / Q5SRE5 / Q6ZQH8
  
Species: Gallus gallus
  
Chr. number: 17
Strand: 1
Band:
Gene start: 5731516
Gene end: 5895780
  
Corresponding Affymetrix probe sets: GgaAffx.2791.1.S1_s_at (Chicken Array)   GgaAffx.2791.3.S1_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000047804
Ensembl peptide - ENSGALP00000061848
Ensembl peptide - ENSGALP00000058268
Ensembl peptide - ENSGALP00000056352
Ensembl peptide - ENSGALP00000052012
Ensembl peptide - ENSGALP00000051690
NCBI entrez gene - 417198     See in Manteia.
RefSeq - NM_001030690
RefSeq - XM_015279483
RefSeq - XM_015279484
RefSeq Peptide - NP_001025861
swissprot - A0A1D5PFX3
swissprot - A0A1L1RSQ7
swissprot - A0A1D5P539
swissprot - A0A1D5PZ59
swissprot - A0A1D5PTV2
swissprot - A0A1D5PGT8
Ensembl - ENSGALG00000043394
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 nup188ENSDARG00000030022Danio rerio
 AL672142.1ENSG00000251184Homo sapiens
 NUP188ENSG00000095319Homo sapiens
 Gm28038ENSMUSG00000098794Mus musculus
 Nup188ENSMUSG00000052533Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR016024  Armadillo-type fold
 IPR018864  Nucleoporin Nup188


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006913 nucleocytoplasmic transport IEA
 cellular_componentGO:0005622 intracellular IEA
 molecular_functionGO:0017056 structural constituent of nuclear pore IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
snRNP Assembly
SUMOylation of DNA damage response and repair proteins
SUMOylation of ubiquitinylation proteins
Nuclear Pore Complex (NPC) Disassembly
SUMOylation of SUMOylation proteins
SUMOylation of chromatin organization proteins
SUMOylation of DNA replication proteins
Transcriptional regulation by small RNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr