ENSDARG00000030602


Danio rerio

Features
Gene ID: ENSDARG00000030602
  
Biological name :rps19
  
Synonyms : ribosomal protein S19 / rps19
  
Possible biological names infered from orthology : 40S ribosomal protein S19 / P39019 / Q9CZX8
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 24188114
Gene end: 24195361
  
Corresponding Affymetrix probe sets: Dr.15372.2.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000133580
Ensembl peptide - ENSDARP00000152819
Ensembl peptide - ENSDARP00000048598
Ensembl peptide - ENSDARP00000120183
NCBI entrez gene - 393723     See in Manteia.
swissprot - E9QHH0
swissprot - Q6PBW7
ZFIN ID - ZDB-GENE-040426-1716
Ensembl - ENSDARG00000030602
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS19ENSG00000105372Homo sapiens
 Rps19ENSMUSG00000040952Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001266  Ribosomal protein S19e
 IPR011991  ArsR-like helix-turn-helix domain
 IPR018277  Ribosomal protein S19e, conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0030218 erythrocyte differentiation IMP
 biological_processGO:0035284 brain segmentation IMP
 biological_processGO:0042541 hemoglobin biosynthetic process IMP
 biological_processGO:0043009 chordate embryonic development IMP
 biological_processGO:0045646 regulation of erythrocyte differentiation IMP
 biological_processGO:0048821 erythrocyte development IMP
 biological_processGO:0072332 intrinsic apoptotic signaling pathway by p53 class mediator IGI
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IMP
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IBA
 molecular_functionGO:0003735 structural constituent of ribosome IMP


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000006 ball ball increased size , abnormal
Show

 ZFA:0000007 blood blood apoptotic process increased process quality , abnormal
Show

 ZFA:0000008 brain brain necrotic , abnormal
Show

 ZFA:0000028 heart primordium heart primordium position , abnormal
Show

 ZFA:0000029 hindbrain hindbrain opaque , abnormal
hindbrain undulate , abnormal
Show

 ZFA:0000033 intermediate cell mass of mesoderm intermediate cell mass of mesoderm erythroblast increased amount , abnormal
Show

 ZFA:0000035 lens lens absent , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary aplastic , abnormal
midbrain hindbrain boundary malformed , abnormal
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 ZFA:0000051 otic vesicle otic vesicle decreased size , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000100 cerebellum cerebellum decreased thickness , abnormal
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 ZFA:0000106 extension extension decreased thickness , abnormal
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 ZFA:0000107 eye eye immature , abnormal
eye decreased size , abnormal
eye aplastic , abnormal
eye hypoplastic , abnormal
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 ZFA:0000108 fin fin aplastic , abnormal
Show

 ZFA:0000109 forebrain forebrain morphology , abnormal
forebrain protruding , abnormal
forebrain decreased size , abnormal
forebrain aplastic , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle increased size , abnormal
fourth ventricle opaque , abnormal
Show

 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0000138 otic placode otic placode decreased size , abnormal
otic placode aplastic , abnormal
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 ZFA:0000152 retina retina decreased size , abnormal
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 ZFA:0000160 tegmentum tegmentum opaque , abnormal
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 ZFA:0000339 digestive system digestive system position , abnormal
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 ZFA:0000445 optic tectum optic tectum increased size , abnormal
optic tectum opaque , abnormal
optic tectum aplastic , abnormal
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 ZFA:0000559 otolith organ otolith organ decreased size , abnormal
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 ZFA:0000570 optic primordium optic primordium decreased size , abnormal
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 ZFA:0000737 cranium cranium edematous , abnormal
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 ZFA:0001058 caudal fin caudal fin curved , abnormal
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 ZFA:0001078 thymus thymus T cell decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism decreased length , abnormal
whole organism increased amount , abnormal
whole organism apoptotic , abnormal
whole organism ribosome decreased amount , abnormal
whole organism morphology , abnormal
whole organism decreased size , abnormal
whole organism anterior-posterior axis curved , abnormal
whole organism anterior-posterior axis kinked , abnormal
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 ZFA:0001114 head head decreased size , abnormal
head apoptotic process increased process quality , abnormal
Show

 ZFA:0001117 post-vent region post-vent region bent , abnormal
post-vent region kinked , abnormal
post-vent region curved ventral , abnormal
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 ZFA:0001458 cranial cartilage cranial cartilage malformed , abnormal
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 ZFA:0001613 pharyngeal arch 3-7 pharyngeal arch 3-7 immature , abnormal
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 ZFA:0009014 hematopoietic stem cell hematopoietic stem cell decreased amount , abnormal
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 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
nucleate erythrocyte hemoglobin complex decreased amount , abnormal
nucleate erythrocyte apoptotic , abnormal
Show

 ZFA:0009325 erythroid lineage cell erythroid lineage cell absent , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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