ENSG00000105372


Homo sapiens

Features
Gene ID: ENSG00000105372
  
Biological name :RPS19
  
Synonyms : P39019 / ribosomal protein S19 / RPS19
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 19
Strand: 1
Band: q13.2
Gene start: 41859918
Gene end: 41872926
  
Corresponding Affymetrix probe sets: 202649_x_at (Human Genome U133 Plus 2.0 Array)   213414_s_at (Human Genome U133 Plus 2.0 Array)   242451_x_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000470972
Ensembl peptide - ENSP00000470004
Ensembl peptide - ENSP00000471621
Ensembl peptide - ENSP00000472660
Ensembl peptide - ENSP00000221975
Ensembl peptide - ENSP00000469228
Ensembl peptide - ENSP00000469798
NCBI entrez gene - 6223     See in Manteia.
OMIM - 603474
RefSeq - XM_017027113
RefSeq - NM_001022
RefSeq - NM_001321483
RefSeq - NM_001321484
RefSeq - NM_001321485
RefSeq Peptide - NP_001308413
RefSeq Peptide - NP_001308414
RefSeq Peptide - NP_001013
RefSeq Peptide - NP_001308412
swissprot - M0QXK4
swissprot - M0QYF7
swissprot - M0R2L9
swissprot - M0R140
swissprot - P39019
swissprot - A0A075B6E2
swissprot - B0ZBD0
Ensembl - ENSG00000105372
  
Related genetic diseases (OMIM): 105650 - Diamond-Blackfan anemia 1, 105650
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps19ENSDARG00000030602Danio rerio
 Rps19ENSMUSG00000040952Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001266  Ribosomal protein S19e
 IPR018277  Ribosomal protein S19e, conserved site
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IMP
 biological_processGO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay TAS
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IMP
 biological_processGO:0002548 monocyte chemotaxis IDA
 biological_processGO:0006364 rRNA processing TAS
 biological_processGO:0006412 translation IEA
 biological_processGO:0006413 translational initiation TAS
 biological_processGO:0006614 SRP-dependent cotranslational protein targeting to membrane TAS
 biological_processGO:0007000 nucleolus organization IMP
 biological_processGO:0007219 Notch signaling pathway IEA
 biological_processGO:0009991 response to extracellular stimulus TAS
 biological_processGO:0019083 viral transcription TAS
 biological_processGO:0030218 erythrocyte differentiation IMP
 biological_processGO:0030490 maturation of SSU-rRNA IMP
 biological_processGO:0031640 killing of cells of other organism IDA
 biological_processGO:0042274 ribosomal small subunit biogenesis IMP
 biological_processGO:0050829 defense response to Gram-negative bacterium IDA
 biological_processGO:0051262 protein tetramerization IDA
 biological_processGO:0051272 positive regulation of cellular component movement TAS
 biological_processGO:0060265 positive regulation of respiratory burst involved in inflammatory response IDA
 biological_processGO:0060266 negative regulation of respiratory burst involved in inflammatory response IDA
 biological_processGO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide IDA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005730 nucleolus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0005829 cytosol TAS
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0005925 focal adhesion HDA
 cellular_componentGO:0016020 membrane HDA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IDA
 cellular_componentGO:0070062 extracellular exosome HDA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017134 fibroblast growth factor binding IPI
 molecular_functionGO:0019901 protein kinase binding IPI
 molecular_functionGO:0042803 protein homodimerization activity IDA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
Peptide chain elongation
SRP-dependent cotranslational protein targeting to membrane
Viral mRNA Translation
Selenocysteine synthesis
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Eukaryotic Translation Termination
Regulation of expression of SLITs and ROBOs
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 HP:0000006 Autosomal dominant inheritance "A mode of inheritance that is observed for traits related to a gene encoded on one of the autosomes (i.e., the human chromosomes 1-22) in which a trait manifests in heterozygotes. In the context of medical genetics, an autosomal dominant disorder is caused when a single copy of the mutant allele is present. Males and females are affected equally, and can both transmit the disorder with a risk of 50% for each child of inheriting the mutant allele." [HPO:curators]
Show

 HP:0000078 Abnormality of the genital tract 
Show

 HP:0000079 Abnormality of the urinary tract 
Show

 HP:0000175 Cleft palate "Cleft palate is a developmental defect of the `palate` (FMA:54549) resulting from a failure of fusion of the palatine processes." [HPO:curators]
Show

 HP:0000179 Prominent lower lip "Increased thickness of the lower lip, leading to a prominent appearance of the lower lip." [HPO:curators]
Show

 HP:0000204 Cleft lip "A gap in the `upper lip` (FMA:59817). This is a congenital defect resulting from nonfusion of tissues of the lip during embryonal development." [HPO:probinson]
Show

 HP:0000218 High palate "Height of the palate more than 2 SD above the mean (objective) or palatal height at the level of the first permanent molar more than twice the height of the teeth (subjective)." [pmid:19125428]
Show

 HP:0000252 Microcephaly "Microcephaly is a neurodevelopmental disorder in which the circumference of the head is more than two standard deviations smaller than the age- and gender-dependent norm." [HPO:curators]
Show

 HP:0000270 Delayed closure of fontanelles "Infants normally have two fontanels at birth, the diamond-shaped anterior fontanelle at the junction of the coronal and sagittal sutures, and the posterior fontanelle at the intersection of the occipital and parietal bones. The posterior fontanelle usually closes by the 8th week of life, and the anterior fontanel closes by the 18th month of life on average. This term applies if there is delay of closure of the fontanelles beyond the normal age." [HPO:curators]
Show

 HP:0000278 Retrognathia 
Show

 HP:0000316 Hypertelorism 
Show

 HP:0000347 Mandibular hypoplasia "Underdevelopment of the mandible." [HPO:curators]
Show

 HP:0000457 Flat nose 
Show

 HP:0000465 Webbed neck 
Show

 HP:0000470 Short neck 
Show

 HP:0000486 Strabismus "Strabismus (also known as squint) is a condition in which the eyes are not properly aligned with each other." [HPO:curators]
Show

 HP:0000494 Downward slanting palpebral fissures 
Show

 HP:0000774 Narrow chest 
Show

 HP:0000823 Delayed puberty 
Show

 HP:0000878 11 pairs of ribs 
Show

 HP:0000946 Hypoplastic ilia 
Show

 HP:0000980 Pallor 
Show

 HP:0001155 Abnormality of the hand "An abnormality affecting one or both hands." [HPO:curators]
Show

 HP:0001199 Triphalangeal thumb "In contrast to the metacarpals 2-5, the first metacarpal is embryologically of phalangeal origin. The thumb normally consists of the first metacarpal and a proximal and distal phalanx. All other digits have an additional middle phalanx. This term applies if the thumb has an accessory phalanx, leading to a digit like appearance of the thumb." [HPO:curators]
Show

 HP:0001249 Mental retardation 
Show

 HP:0001508 Failure to thrive 
Show

 HP:0001511 Intrauterine growth retardation 
Show

 HP:0001622 Premature birth 
Show

 HP:0001629 Ventricular septal defect "A hole between the two bottom chambers (ventricles) of the heart. The defect is centered around the most superior aspect of the ventricular septum." [HPO:curators]
Show

 HP:0001631 Atrial septal defect "Atrial septal defect (ASD) is a congenital heart defect that enables blood flow between the left and right atria via the interatrial septum. The three common types of ASD are sinus venosus defects, ostium secundum defects, and ostium primum defects." [HPO:curators]
Show

 HP:0001635 Congestive heart failure "The presence of an abnormality of cardiac function that is responsible for the failure of the heart to pump blood at a rate that is commensurate with the needs of the tissues or a state in which abnormally elevated filling pressures are required for the heart to do so. Heart failure is frequently related to a defect in myocardial contraction." [HPO:curators]
Show

 HP:0001680 Coarctation of aorta "Coarctation of the aorta is a narrowing or constriction of the aorta just distal to the origin of the left subclavian artery." [HPO:curators]
Show

 HP:0001873 Thrombocytopenia 
Show

 HP:0001875 Neutropenia 
Show

 HP:0001894 Thrombocytosis 
Show

 HP:0001896 Reticulocytopenia 
Show

 HP:0001972 Macrocytic anemia 
Show

 HP:0002076 Migraine 
Show

 HP:0002488 Acute leukemia 
Show

 HP:0002669 Osteogenic sarcoma 
Show

 HP:0002697 Parietal foramina 
Show

 HP:0002863 Myelodysplasia 
Show

 HP:0002984 Hypoplasia of the radius "Underdevelopment of the radius." [HPO:curators]
Show

 HP:0003003 Colon cancer 
Show

 HP:0003196 Nasal hypoplasia "Underdevelopment of the `nose` (FMA:46472)." [HPO:probinson]
Show

 HP:0003593 Early onset 
Show

 HP:0004322 Decreased body height "A height below that which is expected according to age and gender norms. Although there is no universally accepted definition of short stature, many refer to "short stature" as height more than 2 standard deviations below the mean for age and gender (or below the 3rd percentile for age and gender dependent norms)." [HPO:curators]
Show

 HP:0004810 congenital hypoplastic anemia 
Show

 HP:0008437 Bifid thoracic vertebrae 
Show

 HP:0008447 Hypoplastic coccygeal vertebrae 
Show

 HP:0008475 Hypoplastic sacral vertebrae 
Show

 HP:0009777 Aplasia of the thumb "Absent thumb." [HPO:curators]
Show

 HP:0009778 Hypoplastic/small thumb 
Show

 HP:0009944 Partial duplication of the phalanges of the thumb "A partial duplication, depending on severity leading to a broad or bifid appearance, affecting one or more of the phalanges of the thumb. As opposed to a complete duplication there is still a variable degree of fusion between the duplicated bones." [HPO:curators]
Show

 HP:0011675 Arrhythmia "Any cardiac rhythm other than the normal sinus rhythm. Such a rhythm may be either of sinus or ectopic origin and either regular or irregular. An arrhythmia may be due to a disturbance in impulse formation or conduction or both." [DDD:dbrown, pmid:19063792]
Show

 HP:0012378 Fatigue "A subjective feeling of tiredness characterized by a lack of energy and motivation." [HPO:probinson]
Show

 HP:0030270 Elevated red cell adenosine deaminase activity "Increase in the activity of adenosine deaminase (ADA), an enzyme involved in purine metabolism, within erythrocytes. ADA is involved in the catabolism of adenosine." [HPO:probinson, pmid:3348976]
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

1 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   


© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr