ENSMUSG00000040952


Mus musculus

Features
Gene ID: ENSMUSG00000040952
  
Biological name :Rps19
  
Synonyms : 40S ribosomal protein S19 / Q9CZX8 / Rps19
  
Possible biological names infered from orthology : P39019 / ribosomal protein S19
  
Species: Mus musculus
  
Chr. number: 7
Strand: 1
Band: A3
Gene start: 24884371
Gene end: 24889806
  
Corresponding Affymetrix probe sets: 10398599 (MoGene1.0st)   10414767 (MoGene1.0st)   10414874 (MoGene1.0st)   10551021 (MoGene1.0st)   1449243_a_at (Mouse Genome 430 2.0 Array)   1460442_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000104068
Ensembl peptide - ENSMUSP00000138466
Ensembl peptide - ENSMUSP00000120774
Ensembl peptide - ENSMUSP00000116311
Ensembl peptide - ENSMUSP00000114949
Ensembl peptide - ENSMUSP00000104066
Ensembl peptide - ENSMUSP00000104067
NCBI entrez gene - 20085     See in Manteia.
MGI - MGI:1333780
RefSeq - XM_006539681
RefSeq - NM_023133
RefSeq - XM_006539680
RefSeq Peptide - NP_075622
swissprot - D3Z722
swissprot - D3Z5R8
swissprot - S4R223
swissprot - D3YUT3
swissprot - D3YUG3
swissprot - Q9CZX8
Ensembl - ENSMUSG00000040952
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps19ENSDARG00000030602Danio rerio
 RPS19ENSG00000105372Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001266  Ribosomal protein S19e
 IPR018277  Ribosomal protein S19e, conserved site
 IPR036388  Winged helix-like DNA-binding domain superfamily
 IPR036390  Winged helix DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly ISO
 biological_processGO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) ISO
 biological_processGO:0002548 monocyte chemotaxis ISO
 biological_processGO:0006364 rRNA processing ISO
 biological_processGO:0006412 translation IEA
 biological_processGO:0007000 nucleolus organization ISO
 biological_processGO:0007219 Notch signaling pathway IDA
 biological_processGO:0030218 erythrocyte differentiation ISS
 biological_processGO:0030490 maturation of SSU-rRNA ISO
 biological_processGO:0031640 killing of cells of other organism ISO
 biological_processGO:0042274 ribosomal small subunit biogenesis ISO
 biological_processGO:0050829 defense response to Gram-negative bacterium ISO
 biological_processGO:0051262 protein tetramerization ISO
 biological_processGO:0060265 positive regulation of respiratory burst involved in inflammatory response ISO
 biological_processGO:0060266 negative regulation of respiratory burst involved in inflammatory response ISO
 biological_processGO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide ISO
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005654 nucleoplasm ISO
 cellular_componentGO:0005730 nucleolus ISS
 cellular_componentGO:0005737 cytoplasm ISO
 cellular_componentGO:0005829 cytosol ISO
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit ISS
 cellular_componentGO:0031012 extracellular matrix ISO
 molecular_functionGO:0003735 structural constituent of ribosome IEA
 molecular_functionGO:0017134 fibroblast growth factor binding ISO
 molecular_functionGO:0019901 protein kinase binding ISO
 molecular_functionGO:0042803 protein homodimerization activity ISO


Pathways (from Reactome)
Pathway description
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000575 dark foot pads "darker color of the foot pads due to excess pigment" [cml:Cathleen M. Lutz, Mouse Genome Informatics Curator]
Show

Allelic Composition: Ext1tm1Yama/Ext1+,Slit2tm1Matl/Slit2tm1Matl,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * 129S5/SvEvBrd * C57BL/6 * SJL

 MP:0002095 abnormal skin pigmentation "variation of skin color or complexion" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Ext1tm1Yama/Ext1+,Slit2tm1Matl/Slit2tm1Matl,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * 129S5/SvEvBrd * C57BL/6 * SJL

 MP:0011091 complete prenatal lethality "death of all organisms of a given genotype in a population between fertilization and birth (Mus: approximately E18.5)" [MGI:csmith]
Show

Allelic Composition: Ext1tm1Yama/Ext1+,Slit2tm1Matl/Slit2tm1Matl,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * 129S5/SvEvBrd * C57BL/6 * SJL

 MP:0011094 complete embryonic lethality before implantation "death of all organisms of a given genotype in a population between fertilization and implantation (Mus: E0 to less than E4.5)" [MGI:csmith]
Show

Allelic Composition: Ercc5tm3Shm/Ercc5tm3Shm
Genetic Background: involves: 129S1/Sv * 129X1/SvJ * C57BL/6J

 MP:0011276 increased tail pigmentation "visually detectable excess of pigment present on the tail surface" [MGI:csmith]
Show

Allelic Composition: Ext1tm1Yama/Ext1+,Slit2tm1Matl/Slit2tm1Matl,Tg(Nes-cre)1Kln/0
Genetic Background: involves: 129S2/SvPas * 129S5/SvEvBrd * C57BL/6 * SJL

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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