ENSDARG00000031228


Danio rerio

Features
Gene ID: ENSDARG00000031228
  
Biological name :podxl
  
Synonyms : podocalyxin-like / podxl
  
Possible biological names infered from orthology : O00592 / Q9R0M4
  
Species: Danio rerio
  
Chr. number: 4
Strand: -1
Band:
Gene start: 11732156
Gene end: 11751037
  
Corresponding Affymetrix probe sets: Dr.9212.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000093077
Ensembl peptide - ENSDARP00000125434
NCBI entrez gene - 563365     See in Manteia.
RefSeq - NM_001045016
RefSeq Peptide - NP_001038481
swissprot - H0WF03
swissprot - Q5RHU2
ZFIN ID - ZDB-GENE-030131-2805
Ensembl - ENSDARG00000031228
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PODXLENSGALG00000006409Gallus gallus
 PODXLENSG00000128567Homo sapiens
 PodxlENSMUSG00000025608Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013836  CD34/Podocalyxin
 IPR017403  Podocalyxin


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007155 cell adhesion IEA
 biological_processGO:0007162 negative regulation of cell adhesion IEA
 biological_processGO:0016477 cell migration IEA
 biological_processGO:0022407 regulation of cell-cell adhesion IEA
 biological_processGO:0035775 pronephric glomerulus morphogenesis IMP
 cellular_componentGO:0005886 plasma membrane IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016324 apical plasma membrane IEA
 cellular_componentGO:0042995 cell projection IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000106 extension extension edematous , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
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 ZFA:0001117 post-vent region post-vent region curved , abnormal
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 ZFA:0001557 pronephric glomerulus pronephric glomerulus hypoplastic , abnormal
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 ZFA:0001558 pronephric tubule pronephric tubule cystic , abnormal
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 ZFA:0001673 pronephric podocyte pronephric podocyte slit diaphragm malformed , abnormal
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 ZFA:0005310 pronephric glomerular capsule pronephric glomerular capsule cystic , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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