ENSDARG00000031809


Danio rerio

Features
Gene ID: ENSDARG00000031809
  
Biological name :rbm24b
  
Synonyms : rbm24b / RNA binding motif protein 24b
  
Possible biological names infered from orthology : D3Z4I3 / Q9BX46 / RBM24 / RNA binding motif protein 24 / RNA-binding protein 24
  
Species: Danio rerio
  
Chr. number: 16
Strand: 1
Band:
Gene start: 53455638
Gene end: 53475519
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000045791
Ensembl peptide - ENSDARP00000127596
NCBI entrez gene - 562236     See in Manteia.
RefSeq - NM_001328141
RefSeq Peptide - NP_001315070
swissprot - F1Q8E8
swissprot - E9QCG4
ZFIN ID - ZDB-GENE-060312-43
Ensembl - ENSDARG00000031809
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM24ENSGALG00000012712Gallus gallus
 RBM24ENSG00000112183Homo sapiens
 Rbm24ENSMUSG00000038132Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm24a / Q76LC6 / RNA binding motif protein 24a / RBM24* / D3Z4I3* / Q9BX46* / RNA-binding protein 24 * / RNA binding motif protein 24*ENSDARG0000010299575
rbm38 / RNA binding motif protein 38 / Q62176* / Q9H0Z9* / RNA-binding protein 38 *ENSDARG0000005881856


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0003228 atrial cardiac muscle tissue development IMP
 biological_processGO:0003229 ventricular cardiac muscle tissue development IMP
 biological_processGO:0006397 mRNA processing IMP
 biological_processGO:0007519 skeletal muscle tissue development IMP
 biological_processGO:0048702 embryonic neurocranium morphogenesis IMP
 biological_processGO:0072358 cardiovascular system development IGI
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000114 heart heart edematous , abnormal
heart deformed , abnormal
Show

 ZFA:0000155 somite somite morphology , abnormal
somite shape , abnormal
somite spatial pattern , abnormal
somite malformed , abnormal
somite decreased amount , abnormal
Show

 ZFA:0000360 heart tube heart tube unstructured , abnormal
Show

 ZFA:0000477 posterior cardinal vein posterior cardinal vein absent , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001461 chondrocranium cartilage chondrocranium cartilage hypoplastic , abnormal
Show

 ZFA:0001652 head muscle head muscle malformed , abnormal
Show

 ZFA:0005024 trunk vasculature trunk vasculature hypoplastic , abnormal
trunk vasculature disorganized , abnormal
Show

 ZFA:0009115 skeletal muscle cell skeletal muscle cell disorganized , abnormal
skeletal muscle cell loose , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr