ENSDARG00000102995


Danio rerio

Features
Gene ID: ENSDARG00000102995
  
Biological name :rbm24a
  
Synonyms : Q76LC6 / rbm24a / RNA binding motif protein 24a
  
Possible biological names infered from orthology : D3Z4I3 / Q9BX46 / RBM24 / RNA binding motif protein 24 / RNA-binding protein 24
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 46113828
Gene end: 46148977
  
Corresponding Affymetrix probe sets: Dr.16608.1.S1_at (Zebrafish Array)   Dr.3888.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000130407
Ensembl peptide - ENSDARP00000135480
NCBI entrez gene - 405801     See in Manteia.
swissprot - B3DI77
swissprot - Q76LC6
swissprot - A0A0R4ICY2
ZFIN ID - ZDB-GENE-040628-1
Ensembl - ENSDARG00000102995
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RBM24ENSGALG00000012712Gallus gallus
 RBM24ENSG00000112183Homo sapiens
 Rbm24ENSMUSG00000038132Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rbm24b / RNA binding motif protein 24b / RBM24* / D3Z4I3* / Q9BX46* / RNA-binding protein 24 * / RNA binding motif protein 24*ENSDARG0000003180980
rbm38 / RNA binding motif protein 38 / Q62176* / Q9H0Z9* / RNA-binding protein 38 *ENSDARG0000005881862


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001756 somitogenesis IMP
 biological_processGO:0001947 heart looping IMP
 biological_processGO:0003228 atrial cardiac muscle tissue development IMP
 biological_processGO:0006397 mRNA processing IMP
 biological_processGO:0007519 skeletal muscle tissue development IMP
 biological_processGO:0010830 regulation of myotube differentiation ISS
 biological_processGO:0030154 cell differentiation IEA
 biological_processGO:0043488 regulation of mRNA stability ISS
 biological_processGO:0048702 embryonic neurocranium morphogenesis IMP
 biological_processGO:0060297 regulation of sarcomere organization IMP
 biological_processGO:0072358 cardiovascular system development IGI
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003730 mRNA 3"-UTR binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000009 cardiac ventricle cardiac ventricle hypotrophic , abnormal
cardiac ventricle non-contractile , abnormal
Show

 ZFA:0000014 dorsal aorta dorsal aorta absent , abnormal
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 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000084 yolk yolk concave , abnormal
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 ZFA:0000107 eye eye decreased size , abnormal
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 ZFA:0000114 heart heart edematous , abnormal
heart morphology , abnormal
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 ZFA:0000155 somite somite morphology , abnormal
somite shape , abnormal
somite spatial pattern , abnormal
somite malformed , abnormal
somite decreased amount , abnormal
Show

 ZFA:0000180 caudal vein caudal vein absent , abnormal
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 ZFA:0000186 common cardinal vein common cardinal vein decreased width , abnormal
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 ZFA:0000471 atrium atrium dilated , abnormal
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 ZFA:0000477 posterior cardinal vein posterior cardinal vein increased thickness , abnormal
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 ZFA:0001094 whole organism whole organism viability , abnormal
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 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001205 Meckel s cartilage Meckels cartilage absent , abnormal
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 ZFA:0001399 palatoquadrate cartilage palatoquadrate cartilage absent , abnormal
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 ZFA:0001405 ethmoid cartilage ethmoid cartilage absent , abnormal
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 ZFA:0001422 hyosymplectic cartilage hyosymplectic cartilage absent , abnormal
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 ZFA:0001461 chondrocranium cartilage chondrocranium cartilage aplastic , abnormal
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 ZFA:0001652 head muscle head muscle malformed , abnormal
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 ZFA:0005024 trunk vasculature trunk vasculature hypoplastic , abnormal
trunk vasculature disorganized , abnormal
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 ZFA:0009115 skeletal muscle cell skeletal muscle cell disorganized , abnormal
skeletal muscle cell loose , abnormal
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 ZFA:0009316 cardiac muscle cell cardiac muscle cell striated muscle thin filament disorganized , abnormal
cardiac muscle cell sarcomere disorganized , abnormal
cardiac muscle cell decreased size , abnormal
cardiac muscle cell striated muscle myosin thick filament disorganized , abnormal
cardiac muscle cell Z disc disorganized , abnormal
cardiac muscle cell myofibril sparse , abnormal
cardiac muscle cell sarcomere increased length , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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