ENSDARG00000033596


Danio rerio

Features
Gene ID: ENSDARG00000033596
  
Biological name :polr2c
  
Synonyms : polr2c / polymerase (RNA) II (DNA directed) polypeptide C
  
Possible biological names infered from orthology : DNA-directed RNA polymerase II subunit RPB3 / P19387 / P97760 / RNA polymerase II subunit C
  
Species: Danio rerio
  
Chr. number: 25
Strand: -1
Band:
Gene start: 14369493
Gene end: 14378835
  
Corresponding Affymetrix probe sets: Dr.9758.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000043811
NCBI entrez gene - 334669     See in Manteia.
RefSeq - NM_001167956
RefSeq Peptide - NP_001161428
swissprot - Q7ZV11
ZFIN ID - ZDB-GENE-030131-6609
Ensembl - ENSDARG00000033596
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 POLR2CENSGALG00000001168Gallus gallus
 P19387ENSG00000102978Homo sapiens
 P97760ENSMUSG00000031783Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR009025  DNA-directed RNA polymerase, RBP11-like dimerisation domain
 IPR011262  DNA-directed RNA polymerase, insert domain
 IPR011263  DNA-directed RNA polymerase, RpoA/D/Rpb3-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 cellular_componentGO:0005665 DNA-directed RNA polymerase II, core complex IBA
 molecular_functionGO:0001055 RNA polymerase II activity IBA
 molecular_functionGO:0003899 DNA-directed 5"-3" RNA polymerase activity IEA
 molecular_functionGO:0046983 protein dimerization activity IEA


Pathways (from Reactome)
Pathway description
Formation of RNA Pol II elongation complex
Formation of the Early Elongation Complex
Transcriptional regulation by small RNAs
RNA Polymerase II Pre-transcription Events
Formation of TC-NER Pre-Incision Complex
Dual incision in TC-NER
Gap-filling DNA repair synthesis and ligation in TC-NER
TP53 Regulates Transcription of DNA Repair Genes
FGFR2 alternative splicing
RNA polymerase II transcribes snRNA genes
mRNA Capping
mRNA Splicing - Major Pathway
mRNA Splicing - Minor Pathway
Processing of Capped Intron-Containing Pre-mRNA
RNA Polymerase II Promoter Escape
RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
RNA Polymerase II Transcription Initiation
RNA Polymerase II Transcription Elongation
RNA Polymerase II Transcription Initiation And Promoter Clearance
RNA Pol II CTD phosphorylation and interaction with CE
Estrogen-dependent gene expression


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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