ENSDARG00000034178


Danio rerio

Features
Gene ID: ENSDARG00000034178
  
Biological name :cpsf1
  
Synonyms : cleavage and polyadenylation specific factor 1 / cpsf1 / si:ch73-49k18.1
  
Possible biological names infered from orthology : Cleavage and polyadenylation specificity factor subunit 1 / Q10570 / Q9EPU4
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 11897631
Gene end: 11975164
  
Corresponding Affymetrix probe sets: Dr.5022.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000023736
Ensembl peptide - ENSDARP00000135813
Ensembl peptide - ENSDARP00000134781
Ensembl peptide - ENSDARP00000130523
NCBI entrez gene - 432372     See in Manteia.
RefSeq - NM_001114681
RefSeq - XM_005159584
RefSeq Peptide - NP_001108153
swissprot - F6NXE7
swissprot - F6PCU2
swissprot - A0A0R4IJ92
swissprot - A0A0R4IH63
swissprot - A0A0R4IC37
ZFIN ID - ZDB-GENE-040709-2
ZFIN ID - ZDB-GENE-141222-80
Ensembl - ENSDARG00000034178
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CPSF1ENSG00000071894Homo sapiens
 Cpsf1ENSMUSG00000034022Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000504  RNA recognition motif domain
 IPR003903  Ubiquitin interacting motif
 IPR004170  WWE domain
 IPR004871  Cleavage/polyadenylation specificity factor, A subunit, C-terminal
 IPR012317  Poly(ADP-ribose) polymerase, catalytic domain
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR034464  PARP-10, RNA recognition motif 1 and 2


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IMP
 biological_processGO:0060216 definitive hemopoiesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000076 swim bladder swim bladder morphology , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
eye quality , abnormal
Show

 ZFA:0000112 gut gut quality , abnormal
gut hypoplastic , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
Show

 ZFA:0000123 liver liver quality , abnormal
liver hypoplastic , abnormal
Show

 ZFA:0000943 pectoral fin skeleton pectoral fin skeleton decreased size , abnormal
Show

 ZFA:0001094 whole organism whole organism shape , abnormal
whole organism bent , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
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 ZFA:0001115 trunk trunk iridophore decreased amount , abnormal
trunk decreased thickness , abnormal
trunk bent , abnormal
trunk necrotic , abnormal
Show

 ZFA:0001117 post-vent region post-vent region iridophore decreased amount , abnormal
post-vent region quality , abnormal
Show

 ZFA:0001161 pectoral fin pectoral fin decreased size , abnormal
Show

 ZFA:0001273 ventral mandibular arch ventral mandibular arch shape , abnormal
Show

 ZFA:0001400 ceratohyal cartilage ceratohyal cartilage morphology , abnormal
Show

 ZFA:0001439 anatomical system anatomical system quality , abnormal
Show

 ZFA:0001516 ceratobranchial cartilage ceratobranchial cartilage malformed , abnormal
Show

 ZFA:0005223 lateral larval melanophore stripe lateral larval melanophore stripe melanocyte decreased amount , abnormal
Show

 ZFA:0009014 hematopoietic stem cell hematopoietic stem cell decreased amount , abnormal
hematopoietic stem cell apoptotic , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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