ENSMUSG00000034022


Mus musculus

Features
Gene ID: ENSMUSG00000034022
  
Biological name :Cpsf1
  
Synonyms : Cleavage and polyadenylation specificity factor subunit 1 / Cpsf1 / Q9EPU4
  
Possible biological names infered from orthology : cleavage and polyadenylation specific factor 1 / Q10570
  
Species: Mus musculus
  
Chr. number: 15
Strand: -1
Band: D3
Gene start: 76595803
Gene end: 76607591
  
Corresponding Affymetrix probe sets: 10429972 (MoGene1.0st)   1417665_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000071794
Ensembl peptide - ENSMUSP00000155098
Ensembl peptide - ENSMUSP00000155308
Ensembl peptide - ENSMUSP00000155746
NCBI entrez gene - 94230     See in Manteia.
MGI - MGI:2679722
RefSeq - XM_006521603
RefSeq - NM_001164173
RefSeq - NM_053193
RefSeq - XM_006521602
RefSeq Peptide - NP_001157645
RefSeq Peptide - NP_444423
swissprot - Q9EPU4
Ensembl - ENSMUSG00000034022
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 cpsf1ENSDARG00000034178Danio rerio
 CPSF1ENSG00000071894Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004871  Cleavage/polyadenylation specificity factor, A subunit, C-terminal
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006378 mRNA polyadenylation IEA
 biological_processGO:0006379 mRNA cleavage IBA
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005847 mRNA cleavage and polyadenylation specificity factor complex IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0003729 mRNA binding IBA
 molecular_functionGO:0005515 protein binding IEA
 molecular_functionGO:0019899 enzyme binding IEA
 molecular_functionGO:0035925 mRNA 3"-UTR AU-rich region binding IEA


Pathways (from Reactome)
Pathway description
Cleavage of Growing Transcript in the Termination Region
mRNA Splicing - Major Pathway
mRNA 3-end processing
Processing of Intronless Pre-mRNAs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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