ENSDARG00000034503


Danio rerio

Features
Gene ID: ENSDARG00000034503
  
Biological name :per2
  
Synonyms : per2 / period circadian clock 2
  
Possible biological names infered from orthology : O15055 / period circadian regulator 2
  
Species: Danio rerio
  
Chr. number: 2
Strand: -1
Band:
Gene start: 48309600
Gene end: 48375342
  
Corresponding Affymetrix probe sets: Dr.6754.1.A1_at (Zebrafish Array)   DrAffx.2.2.S1_at (Zebrafish Array)   NM_182857_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000124374
Ensembl peptide - ENSDARP00000088777
NCBI entrez gene - 140633     See in Manteia.
RefSeq - XM_009298837
RefSeq - NM_182857
RefSeq Peptide - NP_878277
swissprot - F8W3K8
swissprot - F1QUT1
ZFIN ID - ZDB-GENE-011220-2
Ensembl - ENSDARG00000034503
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PER2ENSGALG00000005521Gallus gallus
 PER2ENSG00000132326Homo sapiens
 Per2ENSMUSG00000055866Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
per1b / period circadian clock 1b / PER1* / O35973* / O15534* / period circadian regulator 1* / Period circadian protein homolog 1 *ENSDARG0000001249942
per1a / period circadian clock 1a / PER1* / O35973* / O15534* / period circadian regulator 1* / Period circadian protein homolog 1 *ENSDARG0000005688539
per3 / period circadian clock 3 / P56645* / O70361* / period circadian regulator 3* / Period circadian protein homolog 3 *ENSDARG0000001051934


Protein motifs (from Interpro)
Interpro ID Name
 IPR000014  PAS domain
 IPR013655  PAS fold-3
 IPR022728  Period circadian-like, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0009409 response to cold IDA
 biological_processGO:0009411 response to UV IDA
 biological_processGO:0009416 response to light stimulus IEP
 biological_processGO:0009648 photoperiodism IEP
 biological_processGO:0016525 negative regulation of angiogenesis IMP
 biological_processGO:0042542 response to hydrogen peroxide IEP
 biological_processGO:0042753 positive regulation of circadian rhythm IMP
 biological_processGO:0043153 entrainment of circadian clock by photoperiod IMP
 biological_processGO:0045475 locomotor rhythm IMP
 molecular_functionGO:0003682 chromatin binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001285 intersegmental vessel intersegmental vessel increased length , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr