ENSDARG00000035147


Danio rerio

Features
Gene ID: ENSDARG00000035147
  
Biological name :lrwd1
  
Synonyms : B0R160 / leucine-rich repeats and WD repeat domain containing 1 / lrwd1
  
Possible biological names infered from orthology : Leucine-rich repeat and WD repeat-containing protein 1 / Q8BUI3 / Q9UFC0
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 61475346
Gene end: 61504874
  
Corresponding Affymetrix probe sets: Dr.3650.1.S1_at (Zebrafish Array)   Dr.3650.2.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000050905
Ensembl peptide - ENSDARP00000134872
NCBI entrez gene - 327124     See in Manteia.
RefSeq - NM_001305662
RefSeq - XM_017356041
RefSeq - XM_021476013
RefSeq - XM_678221
RefSeq Peptide - NP_001292591
swissprot - B0R160
swissprot - A0A0R4IKV7
ZFIN ID - ZDB-GENE-030131-5335
Ensembl - ENSDARG00000035147
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 LRWD1ENSGALG00000001852Gallus gallus
 LRWD1ENSG00000161036Homo sapiens
 Lrwd1ENSMUSG00000029703Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001611  Leucine-rich repeat
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR019775  WD40 repeat, conserved site
 IPR025875  Leucine rich repeat 4
 IPR032675  Leucine-rich repeat domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006260 DNA replication IEA
 biological_processGO:0006325 chromatin organization ISS
 biological_processGO:0071169 establishment of protein localization to chromatin ISS
 cellular_componentGO:0000775 chromosome, centromeric region IEA
 cellular_componentGO:0000776 kinetochore ISS
 cellular_componentGO:0000777 condensed chromosome kinetochore IEA
 cellular_componentGO:0000781 chromosome, telomeric region IEA
 cellular_componentGO:0005634 nucleus ISS
 cellular_componentGO:0005664 nuclear origin of replication recognition complex ISS
 cellular_componentGO:0005694 chromosome IEA
 cellular_componentGO:0005721 pericentric heterochromatin ISS
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005815 microtubule organizing center IEA
 cellular_componentGO:0005856 cytoskeleton IEA
 cellular_componentGO:0031933 telomeric heterochromatin ISS
 molecular_functionGO:0003682 chromatin binding ISS
 molecular_functionGO:0008327 methyl-CpG binding ISS
 molecular_functionGO:0035064 methylated histone binding ISS


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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