ENSDARG00000035622


Danio rerio

Features
Gene ID: ENSDARG00000035622
  
Biological name :xbp1
  
Synonyms : X-box binding protein 1 / xbp1
  
Possible biological names infered from orthology : O35426 / P17861
  
Species: Danio rerio
  
Chr. number: 5
Strand: -1
Band:
Gene start: 15944411
Gene end: 15948920
  
Corresponding Affymetrix probe sets: Dr.12594.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000051648
Ensembl peptide - ENSDARP00000106586
Ensembl peptide - ENSDARP00000140644
NCBI entrez gene - 140614     See in Manteia.
RefSeq - NM_131874
RefSeq Peptide - NP_571949
swissprot - F1R5F9
swissprot - A0A0R4IYM3
swissprot - Q90X27
ZFIN ID - ZDB-GENE-011210-2
Ensembl - ENSDARG00000035622
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 XBP1ENSGALG00000005796Gallus gallus
 XBP1ENSG00000100219Homo sapiens
 Xbp1ENSMUSG00000020484Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR004827  Basic-leucine zipper domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0006357 regulation of transcription by RNA polymerase II IEA
 biological_processGO:0006366 transcription by RNA polymerase II IDA
 biological_processGO:0006990 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response IBA
 biological_processGO:0035188 hatching IMP
 biological_processGO:0048785 hatching gland development IMP
 cellular_componentGO:0005634 nucleus IBA
 molecular_functionGO:0000977 RNA polymerase II regulatory region sequence-specific DNA binding IBA
 molecular_functionGO:0000981 RNA polymerase II transcription factor activity, sequence-specific DNA binding IDA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000123 liver liver decreased size , abnormal
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 ZFA:0009151 hatching gland cell hatching gland cell secretory granule decreased size , abnormal
hatching gland cell secretory granule decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr