ENSDARG00000035692


Danio rerio

Features
Gene ID: ENSDARG00000035692
  
Biological name :rps3a
  
Synonyms : Q6PBY1 / ribosomal protein S3A / rps3a
  
Possible biological names infered from orthology : P61247 / P97351 / ribosomal protein S3A1 / Rps3a1
  
Species: Danio rerio
  
Chr. number: 1
Strand: 1
Band:
Gene start: 24355515
Gene end: 24359653
  
Corresponding Affymetrix probe sets: Dr.907.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000051762
NCBI entrez gene - 337240     See in Manteia.
swissprot - Q6PBY1
ZFIN ID - ZDB-GENE-030131-9184
Ensembl - ENSDARG00000035692
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS3AENSGALG00000010077Gallus gallus
 RPS3AENSG00000145425Homo sapiens
 P97351ENSMUSG00000028081Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001593  Ribosomal protein S3Ae
 IPR018281  Ribosomal protein S3Ae, conserved site
 IPR027500  40S ribosomal protein S1/3, eukaryotes


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 biological_processGO:0043009 chordate embryonic development IMP
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005829 cytosol IBA
 cellular_componentGO:0005840 ribosome IEA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000006 ball ball increased size , abnormal
ball opaque , abnormal
Show

 ZFA:0000008 brain brain necrotic , abnormal
Show

 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000029 hindbrain hindbrain quality , abnormal
hindbrain undulate , abnormal
Show

 ZFA:0000035 lens lens decreased size , abnormal
Show

 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary aplastic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000079 telencephalon telencephalon hypoplastic , abnormal
Show

 ZFA:0000100 cerebellum cerebellum aplastic , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000108 fin fin aplastic , abnormal
Show

 ZFA:0000109 forebrain forebrain protruding , abnormal
Show

 ZFA:0000110 fourth ventricle fourth ventricle distended , abnormal
fourth ventricle edematous , abnormal
Show

 ZFA:0000114 heart heart quality , abnormal
heart edematous , abnormal
Show

 ZFA:0000138 otic placode otic placode decreased size , abnormal
Show

 ZFA:0000142 peripheral nervous system peripheral nervous system nerve neoplastic , abnormal
peripheral nervous system chromosome amount , abnormal
Show

 ZFA:0000152 retina retina decreased size , abnormal
Show

 ZFA:0000445 optic tectum optic tectum opaque , abnormal
Show

 ZFA:0001094 whole organism whole organism viability , abnormal
whole organism decreased size , abnormal
whole organism necrotic , abnormal
whole organism viable , abnormal
whole organism dead , abnormal
Show

 ZFA:0001114 head head apoptotic process increased occurrence , abnormal
head apoptotic process increased occurrence , exacerbated
head decreased size , abnormal
Show

 ZFA:0001115 trunk trunk decreased thickness , abnormal
trunk necrotic , abnormal
trunk increased width , abnormal
trunk undulate , abnormal
Show

 ZFA:0001117 post-vent region post-vent region curved , abnormal
post-vent region bent , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton malformed , exacerbated
Show

 ZFA:0001580 neurocranium neurocranium malformed , exacerbated
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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