ENSDARG00000035860


Danio rerio

Features
Gene ID: ENSDARG00000035860
  
Biological name :rps28
  
Synonyms : Q6PBK3 / ribosomal protein S28 / rps28
  
Possible biological names infered from orthology : P62857 / P62858
  
Species: Danio rerio
  
Chr. number: 2
Strand: 1
Band:
Gene start: 24507597
Gene end: 24509698
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000052062
Ensembl peptide - ENSDARP00000115796
Ensembl peptide - ENSDARP00000127825
NCBI entrez gene - 406307     See in Manteia.
RefSeq - NM_213034
RefSeq Peptide - NP_998199
swissprot - Q6PBK3
swissprot - X1WC82
ZFIN ID - ZDB-GENE-030131-2022
Ensembl - ENSDARG00000035860
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPS28ENSGALG00000024398Gallus gallus
 RPS28ENSG00000233927Homo sapiens
 Rps28ENSMUSG00000067288Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000289  Ribosomal protein S28e
 IPR012340  Nucleic acid-binding, OB-fold
 IPR028626  Ribosomal protein S28e conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0002181 cytoplasmic translation ISS
 biological_processGO:0006412 translation IEA
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit ISS
 cellular_componentGO:0042788 polysomal ribosome ISS
 cellular_componentGO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane ISS
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000142 peripheral nervous system peripheral nervous system nerve neoplastic , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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