ENSMUSG00000067288


Mus musculus

Features
Gene ID: ENSMUSG00000067288
  
Biological name :Rps28
  
Synonyms : P62858 / ribosomal protein S28 / Rps28
  
Possible biological names infered from orthology : P62857
  
Species: Mus musculus
  
Chr. number: 17
Strand: -1
Band: B1
Gene start: 33819027
Gene end: 33824562
  
Corresponding Affymetrix probe sets: 10406024 (MoGene1.0st)   10450050 (MoGene1.0st)   10479809 (MoGene1.0st)   10516479 (MoGene1.0st)   10524415 (MoGene1.0st)   10526215 (MoGene1.0st)   10539700 (MoGene1.0st)   1423763_x_at (Mouse Genome 430 2.0 Array)   1451101_a_at (Mouse Genome 430 2.0 Array)   1454778_x_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000110013
Ensembl peptide - ENSMUSP00000133357
Ensembl peptide - ENSMUSP00000133642
Ensembl peptide - ENSMUSP00000134240
Ensembl peptide - ENSMUSP00000134615
NCBI entrez gene - 54127     See in Manteia.
MGI - MGI:1859516
RefSeq - NM_001355384
RefSeq - XM_006524624
RefSeq - NM_016844
RefSeq Peptide - NP_058540
RefSeq Peptide - NP_001342313
swissprot - P62858
swissprot - Q059I1
swissprot - G3UYV7
Ensembl - ENSMUSG00000067288
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps28ENSDARG00000035860Danio rerio
 RPS28ENSGALG00000024398Gallus gallus
 RPS28ENSG00000233927Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000289  Ribosomal protein S28e
 IPR012340  Nucleic acid-binding, OB-fold
 IPR028626  Ribosomal protein S28e conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0002181 cytoplasmic translation ISS
 biological_processGO:0006364 rRNA processing ISO
 biological_processGO:0006412 translation IEA
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 biological_processGO:0042254 ribosome biogenesis ISO
 biological_processGO:0042274 ribosomal small subunit biogenesis ISO
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit ISS
 cellular_componentGO:0042788 polysomal ribosome ISS
 cellular_componentGO:0098556 cytoplasmic side of rough endoplasmic reticulum membrane ISS
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002169 no phenotype detected "normal, viable and fertile appearance and behavior; indistinguishable from controls" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Chd7Gt(XK403)Byg/Chd7+
Genetic Background: either: (involves: 129P2/OlaHsd * C57BL/6) or (involves: 129P2/OlaHsd * CD-1)

Allelic Composition: Rps28GT(RNA3)Whk/Rps28GT(RNA3)Whk
Genetic Background: involves: 129S7/SvEvBrd

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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