ENSGALG00000024398


Gallus gallus

Features
Gene ID: ENSGALG00000024398
  
Biological name :RPS28
  
Synonyms : ribosomal protein S28 / RPS28
  
Possible biological names infered from orthology : P62857 / P62858
  
Species: Gallus gallus
  
Chr. number: 28
Strand: -1
Band:
Gene start: 874867
Gene end: 875414
  
Corresponding Affymetrix probe sets: Gga.4500.1.S1_at (Chicken Array)   Gga.4500.1.S2_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000040484
NCBI entrez gene - 768930     See in Manteia.
RefSeq - NM_001302177
RefSeq Peptide - NP_001289106
swissprot - F1NTT2
Ensembl - ENSGALG00000024398
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rps28ENSDARG00000035860Danio rerio
 RPS28ENSG00000233927Homo sapiens
 Rps28ENSMUSG00000067288Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000289  Ribosomal protein S28e
 IPR012340  Nucleic acid-binding, OB-fold
 IPR028626  Ribosomal protein S28e conserved site


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000028 ribosomal small subunit assembly IBA
 biological_processGO:0002181 cytoplasmic translation IEA
 biological_processGO:0006364 rRNA processing IEA
 biological_processGO:0006412 translation IEA
 biological_processGO:0030490 maturation of SSU-rRNA IBA
 biological_processGO:0042254 ribosome biogenesis IEA
 biological_processGO:0042274 ribosomal small subunit biogenesis IEA
 cellular_componentGO:0005622 intracellular IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022627 cytosolic small ribosomal subunit IEA
 cellular_componentGO:0042788 polysomal ribosome IEA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Translation initiation complex formation
Formation of a pool of free 40S subunits
Formation of the ternary complex, and subsequently, the 43S complex
Ribosomal scanning and start codon recognition
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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