ENSDARG00000035887


Danio rerio

Features
Gene ID: ENSDARG00000035887
  
Biological name :zgc:91944
  
Synonyms : zgc:91944
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 32571727
Gene end: 32600868
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000052100
Ensembl peptide - ENSDARP00000116159
Ensembl peptide - ENSDARP00000122517
Ensembl peptide - ENSDARP00000150655
NCBI entrez gene - 436941     See in Manteia.
RefSeq - NM_001002668
RefSeq - XM_005159611
RefSeq Peptide - NP_001002668
swissprot - Q1L9E9
swissprot - Q1L9F0
swissprot - F1RAA7
ZFIN ID - ZDB-GENE-040718-417
Ensembl - ENSDARG00000035887
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
CABZ01078261.1 / HMBOX1* / Q6NT76* / homeobox containing 1*ENSDARG0000010928743
hmbox1a / homeobox containing 1a / HMBOX1* / Q6NT76* / Q8BJA3* / homeobox containing 1* / Mus musculus homeobox containing 1 (Hmbox1), transcript variant 3, mRNA.*ENSDARG0000002708241
Q8UW00 / hnf1bb / HNF1 homeobox Bb / HNF1B* / P27889* / P35680* / HNF1 homeobox B* / Hepatocyte nuclear factor 1-beta *ENSDARG0000002229518
hnf1ba / HNF1 homeobox Ba / HNF1B* / P35680* / P27889* / HNF1 homeobox B* / Hepatocyte nuclear factor 1-beta *ENSDARG0000000661518
hnf1a / HNF1 homeobox aENSDARG0000000947016


Protein motifs (from Interpro)
Interpro ID Name
 IPR001356  Homeobox domain
 IPR006899  Hepatocyte nuclear factor 1, N-terminal
 IPR009057  Homeobox-like domain superfamily
 IPR010982  Lambda repressor-like, DNA-binding domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IEA
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0043565 sequence-specific DNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr