ENSDARG00000035913


Danio rerio

Features
Gene ID: ENSDARG00000035913
  
Biological name :yars
  
Synonyms : tyrosyl-tRNA synthetase / yars
  
Possible biological names infered from orthology : P54577
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 30884706
Gene end: 30895273
  
Corresponding Affymetrix probe sets: Dr.9798.1.A1_at (Zebrafish Array)   Dr.9798.2.S1_at (Zebrafish Array)   Dr.9798.3.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000120610
Ensembl peptide - ENSDARP00000144984
Ensembl peptide - ENSDARP00000052125
Ensembl peptide - ENSDARP00000112715
Ensembl peptide - ENSDARP00000113450
Ensembl peptide - ENSDARP00000118032
NCBI entrez gene - 368235     See in Manteia.
swissprot - A0A0R4I9C1
swissprot - Q1LWM0
swissprot - Q1LWM1
swissprot - Q1LWM2
swissprot - Q1LWM3
ZFIN ID - ZDB-GENE-030425-2
Ensembl - ENSDARG00000035913
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 YARSENSGALG00000003563Gallus gallus
 YARSENSG00000134684Homo sapiens
 YarsENSMUSG00000028811Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002305  Aminoacyl-tRNA synthetase, class Ic
 IPR002307  Tyrosine-tRNA ligase
 IPR002547  tRNA-binding domain
 IPR012340  Nucleic acid-binding, OB-fold
 IPR014729  Rossmann-like alpha/beta/alpha sandwich fold
 IPR023617  Tyrosine-tRNA ligase, archaeal/eukaryotic-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006412 translation IEA
 biological_processGO:0006418 tRNA aminoacylation for protein translation IEA
 biological_processGO:0006437 tyrosyl-tRNA aminoacylation IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0000049 tRNA binding IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003723 RNA binding IEA
 molecular_functionGO:0004812 aminoacyl-tRNA ligase activity IEA
 molecular_functionGO:0004831 tyrosine-tRNA ligase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016874 ligase activity IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0001094 whole organism whole organism DNA damage response, detection of DNA damage increased occurrence , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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