ENSDARG00000036069


Danio rerio

Features
Gene ID: ENSDARG00000036069
  
Biological name :ddx39b
  
Synonyms : ddx39b / DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: 1
Band:
Gene start: 27339848
Gene end: 27358545
  
Corresponding Affymetrix probe sets: Dr.5423.1.A1_at (Zebrafish Array)   NM_200943_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000052354
Ensembl peptide - ENSDARP00000144813
NCBI entrez gene - 393917     See in Manteia.
RefSeq - NM_200943
RefSeq Peptide - NP_957237
swissprot - Q7SXU7
ZFIN ID - ZDB-GENE-040426-1259
Ensembl - ENSDARG00000036069
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddx39aa / DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa / Ddx39* / Q8VDW0* / DDX39A* / O00148* / DExD-box helicase 39A* / ATP-dependent RNA helicase DDX39A *ENSDARG0000000622586
ddx39ab / DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab / Ddx39* / Q8VDW0* / DDX39A* / O00148* / DExD-box helicase 39A* / ATP-dependent RNA helicase DDX39A *ENSDARG0000001511186
ddx20 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 / Q9JJY4* / Q9UHI6* / DEAD-box helicase 20* / Probable ATP-dependent RNA helicase DDX20 *ENSDARG0000006120429


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006406 mRNA export from nucleus IBA
 biological_processGO:0006974 cellular response to DNA damage stimulus IBA
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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