ENSDARG00000061204


Danio rerio

Features
Gene ID: ENSDARG00000061204
  
Biological name :ddx20
  
Synonyms : ddx20 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 20
  
Possible biological names infered from orthology : DEAD-box helicase 20 / Probable ATP-dependent RNA helicase DDX20 / Q9JJY4 / Q9UHI6
  
Species: Danio rerio
  
Chr. number: 8
Strand: -1
Band:
Gene start: 28241100
Gene end: 28259779
  
Corresponding Affymetrix probe sets: Dr.17722.1.A1_at (Zebrafish Array)   Dr.5005.3.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000118603
Ensembl peptide - ENSDARP00000143528
Ensembl peptide - ENSDARP00000081471
Ensembl peptide - ENSDARP00000116007
NCBI entrez gene - 556273     See in Manteia.
RefSeq - NM_001123323
RefSeq Peptide - NP_001116795
swissprot - B0S7F4
swissprot - F1R1C1
swissprot - F6NN58
ZFIN ID - ZDB-GENE-030131-202
Ensembl - ENSDARG00000061204
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX20ENSGALG00000001504Gallus gallus
 DDX20ENSG00000064703Homo sapiens
 Ddx20ENSMUSG00000027905Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddx39aa / DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa / Ddx39* / Q8VDW0* / DDX39A* / O00148* / DExD-box helicase 39A* / ATP-dependent RNA helicase DDX39A *ENSDARG0000000622517
ddx39ab / DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab / Ddx39* / Q8VDW0* / DDX39A* / O00148* / DExD-box helicase 39A* / ATP-dependent RNA helicase DDX39A *ENSDARG0000001511116
ddx39b / DEAD (Asp-Glu-Ala-Asp) box polypeptide 39BENSDARG0000003606916


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA


Pathways (from Reactome)
Pathway description
snRNP Assembly


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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