ENSDARG00000015111


Danio rerio

Features
Gene ID: ENSDARG00000015111
  
Biological name :ddx39ab
  
Synonyms : ddx39ab / DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Ab
  
Possible biological names infered from orthology : ATP-dependent RNA helicase DDX39A / Ddx39 / DDX39A / DExD-box helicase 39A / O00148 / Q8VDW0
  
Species: Danio rerio
  
Chr. number: 3
Strand: -1
Band:
Gene start: 5619058
Gene end: 5644028
  
Corresponding Affymetrix probe sets: Dr.1108.1.S1_at (Zebrafish Array)   NM_212977_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000010925
NCBI entrez gene - 406249     See in Manteia.
RefSeq - NM_212977
RefSeq Peptide - NP_998142
swissprot - Q803W0
ZFIN ID - ZDB-GENE-040426-2902
Ensembl - ENSDARG00000015111
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 DDX39AENSG00000123136Homo sapiens
 Ddx39ENSMUSG00000005481Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
ddx39aa / DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa / Ddx39* / Q8VDW0* / DDX39A* / O00148* / DExD-box helicase 39A* / ATP-dependent RNA helicase DDX39A *ENSDARG0000000622596
ddx39b / DEAD (Asp-Glu-Ala-Asp) box polypeptide 39BENSDARG0000003606988
ddx20 / DEAD (Asp-Glu-Ala-Asp) box polypeptide 20 / Q9JJY4* / Q9UHI6* / DEAD-box helicase 20* / Probable ATP-dependent RNA helicase DDX20 *ENSDARG0000006120431


Protein motifs (from Interpro)
Interpro ID Name
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome IBA
 biological_processGO:0006406 mRNA export from nucleus IBA
 biological_processGO:0006974 cellular response to DNA damage stimulus IBA
 biological_processGO:0010468 regulation of gene expression IBA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 cellular_componentGO:0005681 spliceosomal complex IBA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0005524 ATP binding IEA


Pathways (from Reactome)
Pathway description
Transport of Mature mRNA derived from an Intron-Containing Transcript
mRNA 3-end processing


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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