ENSGALG00000001504


Gallus gallus

Features
Gene ID: ENSGALG00000001504
  
Biological name :DDX20
  
Synonyms : DDX20 / DEAD-box helicase 20
  
Possible biological names infered from orthology : Probable ATP-dependent RNA helicase DDX20 / Q9JJY4 / Q9UHI6
  
Species: Gallus gallus
  
Chr. number: 26
Strand: 1
Band:
Gene start: 3284914
Gene end: 3291217
  
Corresponding Affymetrix probe sets: GgaAffx.979.1.S1_at (Chicken Array)   GgaAffx.979.1.S1_s_at (Chicken Array)   GgaAffx.979.3.S1_at (Chicken Array)   GgaAffx.979.4.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000039428
Ensembl peptide - ENSGALP00000061837
NCBI entrez gene - 419869     See in Manteia.
RefSeq - XM_417996
swissprot - A0A1L1RSQ5
swissprot - F1P5C0
Ensembl - ENSGALG00000001504
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ddx20ENSDARG00000061204Danio rerio
 DDX20ENSG00000064703Homo sapiens
 Ddx20ENSMUSG00000027905Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000629  ATP-dependent RNA helicase DEAD-box, conserved site
 IPR001650  Helicase, C-terminal
 IPR011545  DEAD/DEAH box helicase domain
 IPR014001  Helicase superfamily 1/2, ATP-binding domain
 IPR014014  RNA helicase, DEAD-box type, Q motif
 IPR027417  P-loop containing nucleoside triphosphate hydrolase


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000122 negative regulation of transcription by RNA polymerase II IEA
 biological_processGO:0000387 spliceosomal snRNP assembly IEA
 biological_processGO:0010501 RNA secondary structure unwinding IBA
 biological_processGO:0043065 positive regulation of apoptotic process IEA
 biological_processGO:0048477 oogenesis IEA
 biological_processGO:0050810 regulation of steroid biosynthetic process IEA
 cellular_componentGO:0005730 nucleolus IBA
 cellular_componentGO:0005737 cytoplasm IBA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0017053 transcriptional repressor complex IEA
 cellular_componentGO:0032797 SMN complex IEA
 cellular_componentGO:0034719 SMN-Sm protein complex IEA
 cellular_componentGO:0090571 RNA polymerase II transcription repressor complex IEA
 molecular_functionGO:0000166 nucleotide binding IEA
 molecular_functionGO:0003676 nucleic acid binding IEA
 molecular_functionGO:0004004 ATP-dependent RNA helicase activity IBA
 molecular_functionGO:0004386 helicase activity IEA
 molecular_functionGO:0005524 ATP binding IEA
 molecular_functionGO:0016787 hydrolase activity IEA
 molecular_functionGO:0030674 protein binding, bridging IEA
 molecular_functionGO:0042826 histone deacetylase binding IEA
 molecular_functionGO:0070491 repressing transcription factor binding IEA


Pathways (from Reactome)
Pathway description
snRNP Assembly


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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