ENSDARG00000036090


Danio rerio

Features
Gene ID: ENSDARG00000036090
  
Biological name :pard6gb
  
Synonyms : par-6 family cell polarity regulator gamma b / pard6gb
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 19
Strand: -1
Band:
Gene start: 25699329
Gene end: 25772980
  
Corresponding Affymetrix probe sets: Dr.26399.1.A1_at (Zebrafish Array)   Dr.5225.1.A1_at (Zebrafish Array)   NM_212563_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000052392
NCBI entrez gene - 80959     See in Manteia.
RefSeq - NM_212563
RefSeq Peptide - NP_997728
swissprot - Q6TNS1
ZFIN ID - ZDB-GENE-010319-35
Ensembl - ENSDARG00000036090
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PARD6GENSGALG00000013594Gallus gallus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
pard6b / par-6 partitioning defective 6 homolog beta (C. elegans) / Q9BYG5* / Q9JK83* / Partitioning defective 6 homolog beta * / par-6 family cell polarity regulator beta*ENSDARG0000000386552
pard6ga / par-6 family cell polarity regulator gamma a / PARD6G* / Q9BYG4* / Q9JK84* / Partitioning defective 6 homolog gamma * / par-6 family cell polarity regulator gamma*ENSDARG0000003187644
pard6a / par-6 family cell polarity regulator alpha / Q9NPB6* / Q9Z101* / Partitioning defective 6 homolog alpha *ENSDARG0000006937838


Protein motifs (from Interpro)
Interpro ID Name
 IPR000270  PB1 domain
 IPR001478  PDZ domain
 IPR034868  Partitioning defective protein 6, PB1 domain
 IPR034874  Partitioning defective 6 homologue gamma


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001841 neural tube formation IMP
 biological_processGO:0007163 establishment or maintenance of cell polarity IEA
 biological_processGO:0021510 spinal cord development IMP
 biological_processGO:0035050 embryonic heart tube development IMP
 biological_processGO:0035844 cloaca development IMP
 biological_processGO:0045176 apical protein localization IGI
 biological_processGO:0048696 regulation of collateral sprouting in absence of injury IMP
 biological_processGO:0048793 pronephros development IMP
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005737 cytoplasm IDA
 cellular_componentGO:0016020 membrane IDA
 cellular_componentGO:0016324 apical plasma membrane IDA
 cellular_componentGO:0032154 cleavage furrow IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000054 pericardium pericardium edematous , abnormal
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 ZFA:0000112 gut gut malformed , abnormal
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 ZFA:0000121 lateral plate mesoderm lateral plate mesoderm malformed , abnormal
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 ZFA:0000144 retinal pigmented epithelium retinal pigmented epithelium morphology , abnormal
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 ZFA:0000938 central canal central canal malformed , abnormal
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 ZFA:0001094 whole organism whole organism curved dorsal , abnormal
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 ZFA:0001135 neural tube neural tube malformed , abnormal
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 ZFA:0001261 ventricular system ventricular system collapsed , abnormal
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 ZFA:0001319 myocardium myocardium malformed , abnormal
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 ZFA:0009310 retinal ganglion cell retinal ganglion cell axon decreased branchiness , abnormal
retinal ganglion cell collateral sprouting in absence of injury decreased process quality , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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