ENSDARG00000038064


Danio rerio

Features
Gene ID: ENSDARG00000038064
  
Biological name :chmp3
  
Synonyms : charged multivesicular body protein 3 / chmp3 / Q6NY88
  
Possible biological names infered from orthology : Mus musculus charged multivesicular body protein 3 (Chmp3), transcript variant 3, mRNA. / Q9CQ10 / Q9Y3E7 / RNF103-CHMP3 / RNF103-CHMP3 readthrough
  
Species: Danio rerio
  
Chr. number: 17
Strand: 1
Band:
Gene start: 43468732
Gene end: 43476280
  
Corresponding Affymetrix probe sets: Dr.8757.1.A1_at (Zebrafish Array)   NM_213320_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000055486
NCBI entrez gene - 406621     See in Manteia.
RefSeq - NM_213320
RefSeq Peptide - NP_998485
swissprot - Q6NY88
ZFIN ID - ZDB-GENE-040426-2600
Ensembl - ENSDARG00000038064
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 ENSGALG00000015805Gallus gallus
 CHMP3ENSG00000115561Homo sapiens
 RNF103-CHMP3ENSG00000249884Homo sapiens
 Chmp3ENSMUSG00000053119Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005024  Snf7 family


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0007034 vacuolar transport IEA
 biological_processGO:0015031 protein transport IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0005768 endosome IEA
 cellular_componentGO:0005829 cytosol IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0031902 late endosome membrane IEA
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
Macroautophagy
Endosomal Sorting Complex Required For Transport (ESCRT)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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