ENSDARG00000038429


Danio rerio

Features
Gene ID: ENSDARG00000038429
  
Biological name :csrnp1b
  
Synonyms : csrnp1b / cysteine-serine-rich nuclear protein 1b
  
Possible biological names infered from orthology : CSRNP1 / cysteine and serine rich nuclear protein 1 / Mus musculus cysteine-serine-rich nuclear protein 1 (Csrnp1), transcript variant 3, mRNA. / P59054 / Q96S65
  
Species: Danio rerio
  
Chr. number: 24
Strand: -1
Band:
Gene start: 19707609
Gene end: 19719240
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000056081
Ensembl peptide - ENSDARP00000112890
Ensembl peptide - ENSDARP00000098740
NCBI entrez gene - 322795     See in Manteia.
RefSeq - NM_199619
RefSeq Peptide - NP_955913
swissprot - E9QH67
swissprot - E9QDT1
swissprot - F1QNJ1
ZFIN ID - ZDB-GENE-030131-1515
Ensembl - ENSDARG00000038429
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 CSRNP1ENSGALG00000027905Gallus gallus
 CSRNP1ENSG00000144655Homo sapiens
 Csrnp1ENSMUSG00000032515Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
csrnp1a / cysteine-serine-rich nuclear protein 1a / Q96S65* / P59054* / CSRNP1* / cysteine and serine rich nuclear protein 1* / Mus musculus cysteine-serine-rich nuclear protein 1 (Csrnp1),...ENSDARG0000003142642
CSRNP3 / cysteine and serine rich nuclear protein 3 / Q8WYN3*ENSDARG0000007974133
csrnp2 / cysteine-serine-rich nuclear protein 2 / Q8BGQ2* / Q9H175* / cysteine and serine rich nuclear protein 2*ENSDARG0000007597230


Protein motifs (from Interpro)
Interpro ID Name
 IPR023260  Cysteine/serine-rich nuclear protein family
 IPR031972  Cysteine/serine-rich nuclear protein, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0021536 diencephalon development IMP
 biological_processGO:0030901 midbrain development IMP
 cellular_componentGO:0005575 cellular_component ND
 molecular_functionGO:0003674 molecular_function ND


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000042 midbrain hindbrain boundary midbrain hindbrain boundary malformed , abnormal
midbrain hindbrain boundary physical object quality , abnormal
Show

 ZFA:0000051 otic vesicle otic vesicle decreased size , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000109 forebrain forebrain physical object quality , abnormal
Show

 ZFA:0000128 midbrain midbrain neuron decreased amount , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0009256 nucleate erythrocyte nucleate erythrocyte decreased amount , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr