ENSMUSG00000032515


Mus musculus

Features
Gene ID: ENSMUSG00000032515
  
Biological name :Csrnp1
  
Synonyms : Csrnp1 / Mus musculus cysteine-serine-rich nuclear protein 1 (Csrnp1), transcript variant 3, mRNA. / P59054
  
Possible biological names infered from orthology : cysteine and serine rich nuclear protein 1 / Q96S65
  
Species: Mus musculus
  
Chr. number: 9
Strand: -1
Band: F4
Gene start: 119971163
Gene end: 119984658
  
Corresponding Affymetrix probe sets: 10597758 (MoGene1.0st)   1433000_at (Mouse Genome 430 2.0 Array)   1434350_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000035101
Ensembl peptide - ENSMUSP00000149632
Ensembl peptide - ENSMUSP00000149661
Ensembl peptide - ENSMUSP00000150628
Ensembl peptide - ENSMUSP00000149214
NCBI entrez gene - 215418     See in Manteia.
MGI - MGI:2387989
RefSeq - XM_011242954
RefSeq - NM_001357562
RefSeq - NM_153287
RefSeq - XM_006512035
RefSeq - XM_006512037
RefSeq - XM_006512038
RefSeq - XM_006512040
RefSeq - XM_006512041
RefSeq - NM_001357560
RefSeq - NM_001357561
RefSeq Peptide - NP_695019
RefSeq Peptide - NP_001344489
RefSeq Peptide - NP_001344490
RefSeq Peptide - NP_001344491
swissprot - P59054
swissprot - A0A1L1SRY6
swissprot - A0A1L1SRU4
Ensembl - ENSMUSG00000032515
  

This gene has been taged as a transcription factor by TFT
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 csrnp1aENSDARG00000031426Danio rerio
 csrnp1bENSDARG00000038429Danio rerio
 CSRNP1ENSGALG00000027905Gallus gallus
 CSRNP1ENSG00000144655Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
Csrnp3 / P59055 / Cysteine/serine-rich nuclear protein 3 / Q8WYN3* / cysteine and serine rich nuclear protein 3*ENSMUSG0000004464733
Csrnp2 / Q8BGQ2 / Cysteine/serine-rich nuclear protein 2 / Q9H175* / cysteine and serine rich nuclear protein 2*ENSMUSG0000004463630


Protein motifs (from Interpro)
Interpro ID Name
 IPR023260  Cysteine/serine-rich nuclear protein family
 IPR031972  Cysteine/serine-rich nuclear protein, N-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IMP
 biological_processGO:0006366 transcription by RNA polymerase II IEA
 biological_processGO:0006915 apoptotic process IEA
 biological_processGO:0009791 post-embryonic development IMP
 biological_processGO:0045944 positive regulation of transcription by RNA polymerase II IDA
 biological_processGO:0048008 platelet-derived growth factor receptor signaling pathway IMP
 biological_processGO:0048705 skeletal system morphogenesis IMP
 biological_processGO:0060021 roof of mouth development IMP
 biological_processGO:0060325 face morphogenesis IMP
 cellular_componentGO:0005634 nucleus IEA
 molecular_functionGO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific DNA binding IDA
 molecular_functionGO:0003677 DNA binding IEA
 molecular_functionGO:0003700 DNA-binding transcription factor activity IDA
 molecular_functionGO:0043565 sequence-specific DNA binding IDA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0000157 abnormal sternum morphology "malformed long flat bone of the chest; articulates with clavicle and first seven rib pairs" [Stedman s Medical Dictionary:ISBN 0-683-40008-8, J:19212]
Show

Allelic Composition: Arid5bGt(ROSA)75Sor/Arid5bGt(ROSA)75Sor
Genetic Background: involves: 129S4/SvJaeSor

 MP:0002082 postnatal lethality "premature death anytime after postnatal day 1 to weaning age (3 weeks)" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
Show

Allelic Composition: Arid5bGt(ROSA)75Sor/Arid5bGt(ROSA)75Sor
Genetic Background: involves: 129S4/SvJaeSor

Allelic Composition: Csrnp3tm1Jni/Csrnp3tm1Jni,Csrnp1tm1Jni/Csrnp1tm1Jni,Csrnp2tm1Jni/Csrnp2tm1Jni
Genetic Background: involves: 129P2/OlaHsd * C57BL/6

 MP:0003755 abnormal palate "anomaly in the roof of the mouth in vertebrates formed anteriorly by a bony projection of the upper jaw (hard palate) and posteriorly by the fold of connective tissue (soft palate) " [ncbi:Matthew Mailman, NCBI request]
Show

Allelic Composition: Arid5bGt(ROSA)75Sor/Arid5bGt(ROSA)75Sor
Genetic Background: involves: 129S4/SvJaeSor

 MP:0005508 abnormal skeleton morphology "malformation of the bony framework of the body in vertebrates" [Stedman s Medical Dictionary:ISBN 0-683-40008-8]
Show

Allelic Composition: Arid5bGt(ROSA)75Sor/Arid5bGt(ROSA)75Sor
Genetic Background: involves: 129S4/SvJaeSor

 MP:0008146 asymmetric rib-sternum attachment "loss of bilateral symmetry in rib attachments to the sternum" [MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Arid5bGt(ROSA)75Sor/Arid5bGt(ROSA)75Sor
Genetic Background: involves: 129S4/SvJaeSor

 MP:0009895 decreased palatine shelf size "reduced size of the bony projection of the palatine bone that normally fuses with maxillary shelf to form secondary (hard) palate" [ISBN:0-683-40008-8 "Stedman s Medical Dictionary, 27th edition", MGI:csmith "Cynthia L. Smith, Mouse Genome Informatics Curator"]
Show

Allelic Composition: Arid5bGt(ROSA)75Sor/Arid5bGt(ROSA)75Sor
Genetic Background: involves: 129S4/SvJaeSor

 MP:0011086 partial postnatal lethality "the appearance of lower than Mendelian ratios of organisms of a given genotype due to death of some, but not all of the organisms anytime between the neonatal period and weaning age (Mus: P1 to approximately 3 weeks of age)" [MGI:csmith]
Show

Allelic Composition: Actbtm1Npa/Actbtm1Npa
Genetic Background: involves: BALB/cJ

 MP:0030383 small presphenoid bone "reduced size of the anterior part of the body of the sphenoid bone in front of the basisphenoid; it is usually a separate bone in the young or fetus, but becomes a part of the sphenoid in the adult" [MGI:anna]
Show

Allelic Composition: Arid5bGt(ROSA)75Sor/Arid5bGt(ROSA)75Sor
Genetic Background: involves: 129S4/SvJaeSor

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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