ENSDARG00000039005


Danio rerio

Features
Gene ID: ENSDARG00000039005
  
Biological name :trappc1
  
Synonyms : trafficking protein particle complex 1 / trappc1
  
Possible biological names infered from orthology : Q5NCF2 / Q9Y5R8
  
Species: Danio rerio
  
Chr. number: 23
Strand: 1
Band:
Gene start: 44546319
Gene end: 44550533
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000115891
Ensembl peptide - ENSDARP00000121929
Ensembl peptide - ENSDARP00000056934
NCBI entrez gene - 437015     See in Manteia.
RefSeq - XM_021469786
swissprot - E9QJ45
swissprot - F1QJL7
ZFIN ID - ZDB-GENE-040718-242
Ensembl - ENSDARG00000039005
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q9Y5R8ENSG00000170043Homo sapiens
 Q5NCF2ENSMUSG00000049299Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007233  Trafficking protein particle complex subunit
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0005737 cytoplasm IEA
 cellular_componentGO:0030008 TRAPP complex IEA
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
Neutrophil degranulation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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