ENSMUSG00000049299


Mus musculus

Features
Gene ID: ENSMUSG00000049299
  
Biological name :Trappc1
  
Synonyms : Q5NCF2 / trafficking protein particle complex 1 / Trappc1
  
Possible biological names infered from orthology : Q9Y5R8
  
Species: Mus musculus
  
Chr. number: 11
Strand: 1
Band: B3
Gene start: 69323980
Gene end: 69325793
  
Corresponding Affymetrix probe sets: 10377508 (MoGene1.0st)   1436019_a_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000099661
Ensembl peptide - ENSMUSP00000104302
Ensembl peptide - ENSMUSP00000099662
Ensembl peptide - ENSMUSP00000050153
NCBI entrez gene - 245828     See in Manteia.
MGI - MGI:1098727
RefSeq - NM_001024206
RefSeq Peptide - NP_001019377
swissprot - B1ASW5
swissprot - B1ASW6
swissprot - Q14BF8
swissprot - Q5NCF2
Ensembl - ENSMUSG00000049299
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 trappc1ENSDARG00000039005Danio rerio
 Q9Y5R8ENSG00000170043Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR007233  Trafficking protein particle complex subunit
 IPR011012  Longin-like domain superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006888 ER to Golgi vesicle-mediated transport IBA
 biological_processGO:0016192 vesicle-mediated transport IEA
 biological_processGO:0065009 regulation of molecular function IEA
 cellular_componentGO:0005783 endoplasmic reticulum IEA
 cellular_componentGO:0005794 Golgi apparatus IEA
 cellular_componentGO:0030008 TRAPP complex IEA
 molecular_functionGO:0005515 protein binding IPI
 molecular_functionGO:0017112 Rab guanyl-nucleotide exchange factor activity IBA


Pathways (from Reactome)
Pathway description
COPII-mediated vesicle transport
Neutrophil degranulation
RAB GEFs exchange GTP for GDP on RABs


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr