ENSDARG00000039213


Danio rerio

Features
Gene ID: ENSDARG00000039213
  
Biological name :prpf38a
  
Synonyms : pre-mRNA processing factor 38A / prpf38a / Q6DHU4
  
Possible biological names infered from orthology : PRP38 pre-mRNA processing factor 38 (yeast) domain containing A / Q4FK66 / Q8NAV1
  
Species: Danio rerio
  
Chr. number: 6
Strand: -1
Band:
Gene start: 33926829
Gene end: 33931696
  
Corresponding Affymetrix probe sets: Dr.3408.1.A1_at (Zebrafish Array)   NM_001003483_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000057289
NCBI entrez gene - 445089     See in Manteia.
RefSeq - NM_001003483
RefSeq Peptide - NP_001003483
swissprot - Q6DHU4
ZFIN ID - ZDB-GENE-040801-225
Ensembl - ENSDARG00000039213
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 PRPF38AENSGALG00000010627Gallus gallus
 Q8NAV1ENSG00000134748Homo sapiens
 Q4FK66ENSMUSG00000063800Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005037  Pre-mRNA-splicing factor 38
 IPR024767  Pre-mRNA-splicing factor 38, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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