ENSMUSG00000063800


Mus musculus

Features
Gene ID: ENSMUSG00000063800
  
Biological name :Prpf38a
  
Synonyms : PRP38 pre-mRNA processing factor 38 (yeast) domain containing A / Prpf38a / Q4FK66
  
Possible biological names infered from orthology : pre-mRNA processing factor 38A / Q8NAV1
  
Species: Mus musculus
  
Chr. number: 4
Strand: -1
Band: C7
Gene start: 108563172
Gene end: 108579336
  
Corresponding Affymetrix probe sets: 10515012 (MoGene1.0st)   1433565_at (Mouse Genome 430 2.0 Array)   1443282_at (Mouse Genome 430 2.0 Array)   1444087_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000078207
NCBI entrez gene - 230596     See in Manteia.
MGI - MGI:1916962
RefSeq - NM_172697
RefSeq Peptide - NP_766285
swissprot - B2RTE3
swissprot - Q4FK66
Ensembl - ENSMUSG00000063800
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q6DHU4ENSDARG00000039213Danio rerio
 PRPF38AENSGALG00000010627Gallus gallus
 Q8NAV1ENSG00000134748Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005037  Pre-mRNA-splicing factor 38
 IPR024767  Pre-mRNA-splicing factor 38, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus ISO
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0031965 nuclear membrane IEA
 cellular_componentGO:0071011 precatalytic spliceosome IBA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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