ENSG00000134748


Homo sapiens

Features
Gene ID: ENSG00000134748
  
Biological name :PRPF38A
  
Synonyms : pre-mRNA processing factor 38A / PRPF38A / Q8NAV1
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 1
Strand: 1
Band: p32.3
Gene start: 52404564
Gene end: 52420839
  
Corresponding Affymetrix probe sets: 1553709_a_at (Human Genome U133 Plus 2.0 Array)   223230_at (Human Genome U133 Plus 2.0 Array)   235612_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000257181
NCBI entrez gene - 84950     See in Manteia.
OMIM - 617031
RefSeq - NM_032864
RefSeq - XM_011542315
RefSeq Peptide - NP_116253
swissprot - Q8NAV1
Ensembl - ENSG00000134748
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 Q6DHU4ENSDARG00000039213Danio rerio
 PRPF38AENSGALG00000010627Gallus gallus
 Q4FK66ENSMUSG00000063800Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR005037  Pre-mRNA-splicing factor 38
 IPR024767  Pre-mRNA-splicing factor 38, C-terminal


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IDA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0031965 nuclear membrane IDA
 cellular_componentGO:0071011 precatalytic spliceosome IBA
 molecular_functionGO:0003723 RNA binding HDA
 molecular_functionGO:0005515 protein binding IPI


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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