ENSDARG00000039483


Danio rerio

Features
Gene ID: ENSDARG00000039483
  
Biological name :si:dkey-51a16.9
  
Synonyms : si:dkey-51a16.9
  
Possible biological names infered from orthology :
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 25428677
Gene end: 25438298
  
Corresponding Affymetrix probe sets: Dr.1775.1.S1_at (Zebrafish Array)   Dr.20380.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000113081
Ensembl peptide - ENSDARP00000146406
Ensembl peptide - ENSDARP00000107206
NCBI entrez gene - 100005267     See in Manteia.
swissprot - A0A0R4IVL8
swissprot - F1R846
swissprot - F1RBI3
ZFIN ID - ZDB-GENE-030616-560
Ensembl - ENSDARG00000039483
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
No match


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
zgc:175214ENSDARG0000002289179
si:ch1073-392o20.1 / Q8BP31* / Q9H9V4* / RNF122* / ring finger protein 122*ENSDARG0000010207549
rnf24 / ring finger protein 24 / Q8BGI1* / Q9Y225*ENSDARG0000003696544


Protein motifs (from Interpro)
Interpro ID Name
 IPR001841  Zinc finger, RING-type
 IPR011016  Zinc finger, RING-CH-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000209 protein polyubiquitination IBA
 biological_processGO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0046872 metal ion binding IEA
 molecular_functionGO:0061630 ubiquitin protein ligase activity IBA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr