ENSDARG00000039989


Danio rerio

Features
Gene ID: ENSDARG00000039989
  
Biological name :snrnp48
  
Synonyms : small nuclear ribonucleoprotein 48 (U11/U12) / snrnp48
  
Possible biological names infered from orthology : Q6IEG0 / Q9D361 / small nuclear ribonucleoprotein U11/U12 subunit 48 / U11/U12 small nuclear ribonucleoprotein 48 kDa protein
  
Species: Danio rerio
  
Chr. number: 16
Strand: -1
Band:
Gene start: 36974523
Gene end: 36979597
  
Corresponding Affymetrix probe sets: Dr.13851.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000136650
NCBI entrez gene - 325757     See in Manteia.
RefSeq - NM_001115142
RefSeq - XM_021466624
RefSeq Peptide - NP_001108614
swissprot - A0A0R4IMG9
ZFIN ID - ZDB-GENE-030131-4482
Ensembl - ENSDARG00000039989
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SNRNP48ENSGALG00000013005Gallus gallus
 Q6IEG0ENSG00000168566Homo sapiens
 Q9D361ENSMUSG00000021431Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR013087  Zinc finger C2H2-type
 IPR022776  TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain
 IPR032845  U11/U12 small nuclear ribonucleoprotein 48kDa protein


Gene Ontology (GO)
TypeGO IDTermEv.Code
No match


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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