ENSG00000168566


Homo sapiens

Features
Gene ID: ENSG00000168566
  
Biological name :SNRNP48
  
Synonyms : Q6IEG0 / small nuclear ribonucleoprotein U11/U12 subunit 48 / SNRNP48
  
Possible biological names infered from orthology :
  
Species: Homo sapiens
  
Chr. number: 6
Strand: 1
Band: p24.3
Gene start: 7590199
Gene end: 7611967
  
Corresponding Affymetrix probe sets: 1553274_a_at (Human Genome U133 Plus 2.0 Array)   226263_at (Human Genome U133 Plus 2.0 Array)   
  
Cross references: Ensembl peptide - ENSP00000489245
Ensembl peptide - ENSP00000339834
NCBI entrez gene - 154007     See in Manteia.
RefSeq - XM_011514312
RefSeq - NM_152551
RefSeq Peptide - NP_689764
swissprot - Q6IEG0
swissprot - A0A0U1RQZ2
Ensembl - ENSG00000168566
  
See expression report in BioGPS
See gene description in Wikigenes
See gene description in GeneCards
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrnp48ENSDARG00000039989Danio rerio
 SNRNP48ENSGALG00000013005Gallus gallus
 Q9D361ENSMUSG00000021431Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR022776  TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain
 IPR032845  U11/U12 small nuclear ribonucleoprotein 48kDa protein
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000398 mRNA splicing, via spliceosome TAS
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008380 RNA splicing IC
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm TAS
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IDA
 cellular_componentGO:0005829 cytosol IDA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr