ENSMUSG00000021431


Mus musculus

Features
Gene ID: ENSMUSG00000021431
  
Biological name :Snrnp48
  
Synonyms : Q9D361 / Snrnp48 / U11/U12 small nuclear ribonucleoprotein 48 kDa protein
  
Possible biological names infered from orthology : Q6IEG0 / small nuclear ribonucleoprotein U11/U12 subunit 48
  
Species: Mus musculus
  
Chr. number: 13
Strand: 1
Band: A3.3
Gene start: 38204938
Gene end: 38227665
  
Corresponding Affymetrix probe sets: 10404675 (MoGene1.0st)   1423633_at (Mouse Genome 430 2.0 Array)   1425319_s_at (Mouse Genome 430 2.0 Array)   1429908_at (Mouse Genome 430 2.0 Array)   1437180_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000089230
Ensembl peptide - ENSMUSP00000136202
NCBI entrez gene - 67797     See in Manteia.
MGI - MGI:1915047
RefSeq - NM_026382
RefSeq Peptide - NP_080658
swissprot - J3QMA8
swissprot - Q9D361
Ensembl - ENSMUSG00000021431
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 snrnp48ENSDARG00000039989Danio rerio
 SNRNP48ENSGALG00000013005Gallus gallus
 Q6IEG0ENSG00000168566Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR022776  TRM13/UPF0224 family, U11-48K-like CHHC zinc finger domain
 IPR032845  U11/U12 small nuclear ribonucleoprotein 48kDa protein
 IPR036236  Zinc finger C2H2 superfamily


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0008150 biological_process ND
 biological_processGO:0008380 RNA splicing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 cellular_componentGO:0005689 U12-type spliceosomal complex IEA
 cellular_componentGO:0005829 cytosol IEA
 molecular_functionGO:0003674 molecular_function ND
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Minor Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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