ENSDARG00000040534


Danio rerio

Features
Gene ID: ENSDARG00000040534
  
Biological name :epcam
  
Synonyms : epcam / epithelial cell adhesion molecule
  
Possible biological names infered from orthology : P09758 / P16422 / Q8BGV3 / Q99JW5 / TACSTD2 / tumor associated calcium signal transducer 2
  
Species: Danio rerio
  
Chr. number: 13
Strand: 1
Band:
Gene start: 8840772
Gene end: 8843363
  
Corresponding Affymetrix probe sets: Dr.25140.7.A1_at (Zebrafish Array)   Dr.25140.7.A1_a_at (Zebrafish Array)   Dr.26518.1.A1_x_at (Zebrafish Array)   NM_001017593_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000059320
NCBI entrez gene - 406454     See in Manteia.
RefSeq - NM_001017593
RefSeq Peptide - NP_001017593
swissprot - B8JM11
ZFIN ID - ZDB-GENE-040426-2209
Ensembl - ENSDARG00000040534
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 EPCAMENSGALG00000008969Gallus gallus
 TACSTD2ENSGALG00000010867Gallus gallus
 EPCAMENSG00000119888Homo sapiens
 P09758ENSG00000184292Homo sapiens
 EpcamENSMUSG00000045394Mus musculus
 Q8BGV3ENSMUSG00000051397Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR000716  Thyroglobulin type-1


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0001889 liver development IMP
 biological_processGO:0002009 morphogenesis of an epithelium IMP
 biological_processGO:0055113 epiboly involved in gastrulation with mouth forming second IGI
 biological_processGO:0098609 cell-cell adhesion IGI
 cellular_componentGO:0005886 plasma membrane IDA
 cellular_componentGO:0005887 integral component of plasma membrane IBA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0016323 basolateral plasma membrane IDA
 cellular_componentGO:0048471 perinuclear region of cytoplasm IDA


Pathways (from Reactome)
Pathway description
Cell surface interactions at the vascular wall


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000077 tail bud tail bud integument aggregated , abnormal
Show

 ZFA:0000084 yolk yolk protruding out of whole organism , abnormal
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 ZFA:0000086 EVL EVL ruffle absent , abnormal
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 ZFA:0000123 liver liver decreased size , abnormal
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 ZFA:0000940 posterior lateral line neuromast posterior lateral line neuromast decreased amount , abnormal
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 ZFA:0001094 whole organism whole organism broken , abnormal
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 ZFA:0001617 otolith otolith quality , abnormal
otolith decreased size , abnormal
Show

 ZFA:0009111 hepatocyte hepatocyte decreased amount , abnormal
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 ZFA:0009158 keratinocyte keratinocyte aggregated , abnormal
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Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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