ENSDARG00000040779


Danio rerio

Features
Gene ID: ENSDARG00000040779
  
Biological name :med16
  
Synonyms : med16 / mediator complex subunit 16
  
Possible biological names infered from orthology : Q9Y2X0
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 14104417
Gene end: 14143702
  
Corresponding Affymetrix probe sets: Dr.2666.1.A1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000145459
Ensembl peptide - ENSDARP00000059751
NCBI entrez gene - 570199     See in Manteia.
RefSeq - NM_001199872
RefSeq - XM_005155957
RefSeq Peptide - NP_001186801
swissprot - E7F602
ZFIN ID - ZDB-GENE-090306-4
Ensembl - ENSDARG00000040779
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 MED16ENSGALG00000001978Gallus gallus
 MED16ENSG00000175221Homo sapiens
 Med16ENSMUSG00000013833Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001680  WD40 repeat
 IPR015943  WD40/YVTN repeat-like-containing domain superfamily
 IPR017986  WD40-repeat-containing domain
 IPR021665  Mediator complex, subunit Med16


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006351 transcription, DNA-templated IEA
 biological_processGO:0006355 regulation of transcription, DNA-templated IEA
 biological_processGO:0045893 positive regulation of transcription, DNA-templated IBA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0016592 mediator complex IBA
 molecular_functionGO:0003713 transcription coactivator activity IBA


Pathways (from Reactome)
Pathway description
Generic Transcription Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr