ENSDARG00000041150


Danio rerio

Features
Gene ID: ENSDARG00000041150
  
Biological name :slc17a6b
  
Synonyms : Q5W8I8 / slc17a6b / solute carrier family 17 (vesicular glutamate transporter), member 6b
  
Possible biological names infered from orthology : Q9P2U8 / SLC17A6 / solute carrier family 17 member 6
  
Species: Danio rerio
  
Chr. number: 7
Strand: -1
Band:
Gene start: 32811907
Gene end: 32833255
  
Corresponding Affymetrix probe sets: Dr.19019.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000090644
Ensembl peptide - ENSDARP00000090645
NCBI entrez gene - 100149756     See in Manteia.
RefSeq - NM_001005398
RefSeq Peptide - NP_001005398
swissprot - Q5W8I8
swissprot - Q8JFT2
ZFIN ID - ZDB-GENE-030616-554
Ensembl - ENSDARG00000041150
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 SLC17A6ENSGALG00000039254Gallus gallus
 Q9P2U8ENSG00000091664Homo sapiens
 Slc17a6ENSMUSG00000030500Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
slc17a6a / solute carrier family 17 (vesicular glutamate transporter), member 6a / Q9P2U8* / SLC17A6* / solute carrier family 17 member 6*ENSDARG0000000112788
slc17a7a / solute carrier family 17 (vesicular glutamate transporter), member 7a / Q9P2U7* / Q3TXX4* / SLC17A7* / solute carrier family 17 member 7* / Vesicular glutamate transporter 1 *ENSDARG0000001648075
slc17a7b / solute carrier family 17 (vesicular glutamate transporter), member 7b / Q9P2U7* / Q3TXX4* / SLC17A7* / solute carrier family 17 member 7* / Vesicular glutamate transporter 1 *ENSDARG0000009010673
Q1L8X9 / slc17a8 / solute carrier family 17 (vesicular glutamate transporter), member 8 / Q8NDX2* / Q8BFU8* / solute carrier family 17 member 8* / Vesicular glutamate transporter 3 *ENSDARG0000005772873
slc17a5 / solute carrier family 17 (acidic sugar transporter), member 5 / Q8BN82* / Q9NRA2* / Sialin * / solute carrier family 17 member 5*ENSDARG0000005519033
SLC17A3 / si:ch1073-513e17.1 / O00624* / Q14916* / Q5NCM1* / Q5SZA1* / Q61983* / Q9Y2C5* / O00476* / SLC17A1* / SLC17A2* / SLC17A4* / solute carrier family 17 member 4* / solute carrier fam...ENSDARG0000008673930
slc17a9b / solute carrier family 17 (vesicular nucleotide transporter), member 9b / Q8VCL5* / Q9BYT1* / SLC17A9* / solute carrier family 17 member 9*ENSDARG0000001104921
slc17a9a / solute carrier family 17 (vesicular nucleotide transporter), member 9a / Q8VCL5* / Q9BYT1* / SLC17A9* / solute carrier family 17 member 9*ENSDARG0000004295419


Protein motifs (from Interpro)
Interpro ID Name
 IPR011701  Major facilitator superfamily
 IPR020846  Major facilitator superfamily domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006811 ion transport IEA
 biological_processGO:0006814 sodium ion transport IEA
 biological_processGO:0006836 neurotransmitter transport IEA
 biological_processGO:0007268 chemical synaptic transmission IMP
 biological_processGO:0007601 visual perception IMP
 biological_processGO:0015813 L-glutamate transmembrane transport IEA
 biological_processGO:0050896 response to stimulus IEA
 biological_processGO:0055085 transmembrane transport IEA
 cellular_componentGO:0016020 membrane IEA
 cellular_componentGO:0016021 integral component of membrane IEA
 cellular_componentGO:0030054 cell junction IEA
 cellular_componentGO:0030672 synaptic vesicle membrane IEA
 cellular_componentGO:0031410 cytoplasmic vesicle IEA
 cellular_componentGO:0043005 neuron projection IEA
 cellular_componentGO:0045202 synapse IEA
 molecular_functionGO:0005313 L-glutamate transmembrane transporter activity IBA
 molecular_functionGO:0015293 symporter activity IEA


Pathways (from Reactome)
Pathway description
Organic anion transporters


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000396 nervous system nervous system quality , abnormal
Show

 ZFA:0001094 whole organism whole organism lethal (sensu genetics) , abnormal
whole organism increased amount , abnormal
whole organism viability , abnormal
Show

 ZFA:0009310 retinal ganglion cell retinal ganglion cell structure , abnormal
retinal ganglion cell axon irregular spatial pattern , abnormal
retinal ganglion cell axon defasciculated , abnormal
retinal ganglion cell axon displaced , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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