ENSDARG00000041182


Danio rerio

Features
Gene ID: ENSDARG00000041182
  
Biological name :rpl4
  
Synonyms : ribosomal protein L4 / rpl4
  
Possible biological names infered from orthology : P36578 / Q9D8E6
  
Species: Danio rerio
  
Chr. number: 18
Strand: -1
Band:
Gene start: 19451070
Gene end: 19456269
  
Corresponding Affymetrix probe sets: Dr.1347.1.S1_at (Zebrafish Array)   
  
Cross references: Ensembl peptide - ENSDARP00000060362
NCBI entrez gene - 337090     See in Manteia.
swissprot - Q7ZW95
ZFIN ID - ZDB-GENE-030131-9034
Ensembl - ENSDARG00000041182
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RPL4ENSGALG00000007711Gallus gallus
 RPL4ENSG00000174444Homo sapiens
 Rpl4ENSMUSG00000032399Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002136  Ribosomal protein L4/L1e
 IPR023574  Ribosomal protein L4 domain superfamily
 IPR025755  60S ribosomal protein L4, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IBA


Pathways (from Reactome)
Pathway description
L13a-mediated translational silencing of Ceruloplasmin expression
SRP-dependent cotranslational protein targeting to membrane
Major pathway of rRNA processing in the nucleolus and cytosol
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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