ENSGALG00000007711


Gallus gallus

Features
Gene ID: ENSGALG00000007711
  
Biological name :RPL4
  
Synonyms : ribosomal protein L4 / RPL4
  
Possible biological names infered from orthology : P36578 / Q9D8E6
  
Species: Gallus gallus
  
Chr. number: 10
Strand: -1
Band:
Gene start: 18528211
Gene end: 18534374
  
Corresponding Affymetrix probe sets: GgaAffx.12906.1.S1_s_at (Chicken Array)   GgaAffx.20130.1.S1_s_at (Chicken Array)   
  
Cross references: Ensembl peptide - ENSGALP00000044072
Ensembl peptide - ENSGALP00000064770
Ensembl peptide - ENSGALP00000063837
Ensembl peptide - ENSGALP00000063760
Ensembl peptide - ENSGALP00000063426
Ensembl peptide - ENSGALP00000062712
Ensembl peptide - ENSGALP00000062103
Ensembl peptide - ENSGALP00000062054
Ensembl peptide - ENSGALP00000060415
Ensembl peptide - ENSGALP00000059479
Ensembl peptide - ENSGALP00000048219
Ensembl peptide - ENSGALP00000044605
Ensembl peptide - ENSGALP00000012481
NCBI entrez gene - 415551     See in Manteia.
RefSeq - NM_001007479
RefSeq Peptide - NP_001007480
swissprot - A0A1L1RY31
swissprot - A0A1L1RX61
swissprot - A0A1L1RV53
swissprot - A0A1L1RTB9
swissprot - A0A1L1RNQ0
swissprot - A0A1L1RL35
swissprot - A0A1D5P694
swissprot - A0A1D5NW69
swissprot - A0A1D5NUQ4
swissprot - F7BA96
swissprot - A0A1L1S0W5
swissprot - Q5ZII1
swissprot - A0A1L1RYB4
Ensembl - ENSGALG00000007711
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 rpl4ENSDARG00000041182Danio rerio
 RPL4ENSG00000174444Homo sapiens
 Rpl4ENSMUSG00000032399Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR002136  Ribosomal protein L4/L1e
 IPR013000  Ribosomal protein L4/L1e, eukaryotic/archaeal, conserved site
 IPR023574  Ribosomal protein L4 domain superfamily
 IPR025755  60S ribosomal protein L4, C-terminal domain


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0002181 cytoplasmic translation IBA
 biological_processGO:0006412 translation IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005791 rough endoplasmic reticulum IEA
 cellular_componentGO:0005840 ribosome IEA
 cellular_componentGO:0022625 cytosolic large ribosomal subunit IBA
 molecular_functionGO:0003723 RNA binding IBA
 molecular_functionGO:0003735 structural constituent of ribosome IEA


Pathways (from Reactome)
Pathway description
SRP-dependent cotranslational protein targeting to membrane
Formation of a pool of free 40S subunits
GTP hydrolysis and joining of the 60S ribosomal subunit
Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr