ENSDARG00000041376


Danio rerio

Features
Gene ID: ENSDARG00000041376
  
Biological name :rmi1
  
Synonyms : rmi1 / RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae)
  
Possible biological names infered from orthology : Q9D4G9 / Q9H9A7 / RecQ mediated genome instability 1 / RecQ-mediated genome instability protein 1
  
Species: Danio rerio
  
Chr. number: 8
Strand: 1
Band:
Gene start: 49766338
Gene end: 49769987
  
Corresponding Affymetrix probe sets: Dr.12650.1.S1_at (Zebrafish Array)   NM_200180_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000060656
Ensembl peptide - ENSDARP00000148311
NCBI entrez gene - 393149     See in Manteia.
RefSeq - NM_200180
RefSeq Peptide - NP_956474
swissprot - F1R3F9
ZFIN ID - ZDB-GENE-040426-829
Ensembl - ENSDARG00000041376
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 RMI1ENSGALG00000012592Gallus gallus
 RMI1ENSG00000178966Homo sapiens
 Rmi1ENSMUSG00000035367Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
tdrd3 / tudor domain containing 3 / Q9H7E2*ENSDARG0000002542113


Protein motifs (from Interpro)
Interpro ID Name
 IPR013894  RecQ mediated genome instability protein, N-terminal
 IPR032199  Recq-mediated genome instability protein 1, C-terminal OB-fold domain
 IPR033472  RecQ mediated genome instability protein, DUF1767


Gene Ontology (GO)
TypeGO IDTermEv.Code
 molecular_functionGO:0000166 nucleotide binding IEA


Pathways (from Reactome)
Pathway description
HDR through Single Strand Annealing (SSA)
HDR through Homologous Recombination (HRR)
Resolution of D-loop Structures through Holliday Junction Intermediates
Homologous DNA Pairing and Strand Exchange
Processing of DNA double-strand break ends
Presynaptic phase of homologous DNA pairing and strand exchange
Regulation of TP53 Activity through Phosphorylation
G2/M DNA damage checkpoint


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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