ENSDARG00000025421


Danio rerio

Features
Gene ID: ENSDARG00000025421
  
Biological name :tdrd3
  
Synonyms : tdrd3 / tudor domain containing 3
  
Possible biological names infered from orthology : Q91W18 / Q9H7E2 / Tudor domain-containing protein 3
  
Species: Danio rerio
  
Chr. number: 11
Strand: 1
Band:
Gene start: 42726712
Gene end: 42819730
  
Corresponding Affymetrix probe sets: Dr.14999.1.S1_at (Zebrafish Array)   Dr.16828.1.A1_at (Zebrafish Array)   NM_001001823_at (Zebrafish Genome Array with custom cdf files)   
  
Cross references: Ensembl peptide - ENSDARP00000030883
Ensembl peptide - ENSDARP00000129169
Ensembl peptide - ENSDARP00000149904
NCBI entrez gene - 402828     See in Manteia.
RefSeq - NM_001001823
RefSeq - XM_005169411
RefSeq Peptide - NP_001001823
swissprot - X1WG14
swissprot - F1RDB0
ZFIN ID - ZDB-GENE-040426-19
Ensembl - ENSDARG00000025421
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 TDRD3ENSGALG00000016936Gallus gallus
 TDRD3ENSG00000083544Homo sapiens
 Tdrd3ENSMUSG00000022019Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
rmi1 / RMI1, RecQ mediated genome instability 1, homolog (S. cerevisiae) / Q9D4G9* / Q9H9A7* / RecQ mediated genome instability 1* / RecQ-mediated genome instability protein 1 *ENSDARG000000413769


Protein motifs (from Interpro)
Interpro ID Name
 IPR002999  Tudor domain
 IPR009060  UBA-like superfamily
 IPR010304  Survival motor neuron
 IPR013894  RecQ mediated genome instability protein, N-terminal
 IPR015940  Ubiquitin-associated domain
 IPR033472  RecQ mediated genome instability protein, DUF1767


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0006397 mRNA processing IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005737 cytoplasm IEA
 molecular_functionGO:0003723 RNA binding IEA


Pathways (from Reactome)
Pathway description
No match


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
No match
  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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contact: otassy@igbmc.fr