ENSDARG00000041908


Danio rerio

Features
Gene ID: ENSDARG00000041908
  
Biological name :usp39
  
Synonyms : ubiquitin specific peptidase 39 / usp39
  
Possible biological names infered from orthology : Q3TIX9 / Q53GS9
  
Species: Danio rerio
  
Chr. number: 5
Strand: 1
Band:
Gene start: 68826514
Gene end: 68843111
  
Corresponding Affymetrix probe sets:
  
Cross references: Ensembl peptide - ENSDARP00000061405
NCBI entrez gene - 790924     See in Manteia.
RefSeq - NM_001080070
RefSeq Peptide - NP_001073539
swissprot - A3KQ59
ZFIN ID - ZDB-GENE-030131-966
Ensembl - ENSDARG00000041908
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 USP39ENSG00000168883Homo sapiens
 Usp39ENSMUSG00000056305Mus musculus


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR001607  Zinc finger, UBP-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR028889  Ubiquitin specific protease domain
 IPR033809  USP39


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0043484 regulation of RNA splicing IMP
 biological_processGO:0048855 adenohypophysis morphogenesis IMP
 biological_processGO:1904888 cranial skeletal system development IMP
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 ZFA:0000012 central nervous system central nervous system necrotic , abnormal
Show

 ZFA:0000054 pericardium pericardium edematous , abnormal
Show

 ZFA:0000107 eye eye decreased size , abnormal
Show

 ZFA:0000155 somite somite fused with somite , abnormal
Show

 ZFA:0001094 whole organism whole organism decreased size , abnormal
Show

 ZFA:0001114 head head decreased size , abnormal
Show

 ZFA:0001117 post-vent region post-vent region necrotic , abnormal
post-vent region curled , abnormal
Show

 ZFA:0001205 Meckel s cartilage Meckels cartilage morphology , abnormal
Show

 ZFA:0001227 mandibular arch skeleton mandibular arch skeleton decreased size , abnormal
Show

 ZFA:0001282 adenohypophysis adenohypophysis increased size , abnormal
adenohypophysis disorganized , abnormal
Show

 ZFA:0001405 ethmoid cartilage ethmoid cartilage shape , abnormal
Show

 ZFA:0001460 pharyngeal arch cartilage pharyngeal arch cartilage malformed , abnormal
Show

 ZFA:0005581 proximal pars anterior proximal pars anterior morphology , abnormal
Show

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

0 s.

 
External programs and data are copyrighted by and are the property of their respective authors.
The Manteia system, data and analyses are provided "as is" with no warranties, expressed or implied as to capabilities or accuracy. User assumes the entire risk as to the results and performance of the software, data and documentation


                   

© Olivier Tassy / Olivier Pourquie 2007-2024
contact: otassy@igbmc.fr