ENSMUSG00000056305


Mus musculus

Features
Gene ID: ENSMUSG00000056305
  
Biological name :Usp39
  
Synonyms : Q3TIX9 / ubiquitin specific peptidase 39 / Usp39
  
Possible biological names infered from orthology : Q53GS9
  
Species: Mus musculus
  
Chr. number: 6
Strand: -1
Band: C1
Gene start: 72318678
Gene end: 72345184
  
Corresponding Affymetrix probe sets: 10545379 (MoGene1.0st)   1437007_x_at (Mouse Genome 430 2.0 Array)   1460209_at (Mouse Genome 430 2.0 Array)   
  
Cross references: Ensembl peptide - ENSMUSP00000064515
Ensembl peptide - ENSMUSP00000145792
NCBI entrez gene - 28035     See in Manteia.
MGI - MGI:107622
RefSeq - XM_017321609
RefSeq - NM_138592
RefSeq - XM_006506216
RefSeq Peptide - NP_613058
swissprot - Q3TIX9
swissprot - A0A0U1RP18
Ensembl - ENSMUSG00000056305
  
See expression report in BioGPS
See gene description in Wikigenes
See co-cited genes in PubMed


Ortholog prediction (from Ensembl)
Ortholog nameID Species
 usp39ENSDARG00000041908Danio rerio
 USP39ENSG00000168883Homo sapiens


Paralog prediction (from Ensembl)
Paralog nameIDSimilarity(%)
No match


Protein motifs (from Interpro)
Interpro ID Name
 IPR001394  Peptidase C19, ubiquitin carboxyl-terminal hydrolase
 IPR001607  Zinc finger, UBP-type
 IPR013083  Zinc finger, RING/FYVE/PHD-type
 IPR028889  Ubiquitin specific protease domain
 IPR033809  USP39


Gene Ontology (GO)
TypeGO IDTermEv.Code
 biological_processGO:0000245 spliceosomal complex assembly IEA
 biological_processGO:0006397 mRNA processing IEA
 biological_processGO:0007049 cell cycle IEA
 biological_processGO:0008380 RNA splicing IEA
 biological_processGO:0016579 protein deubiquitination IEA
 biological_processGO:0051301 cell division IEA
 cellular_componentGO:0005634 nucleus IEA
 cellular_componentGO:0005654 nucleoplasm IEA
 cellular_componentGO:0005681 spliceosomal complex IEA
 molecular_functionGO:0008270 zinc ion binding IEA
 molecular_functionGO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEA
 molecular_functionGO:0046872 metal ion binding IEA


Pathways (from Reactome)
Pathway description
mRNA Splicing - Major Pathway


Phenotype (from MGI, Zfin or HPO)
IDPhenotypeDefinition Genetic BG
 MP:0002075 abnormal coat color "irregular or unusual pigmentation pattern of the hair in relation to control animals" [csmith:Cynthia L. Smith , Mouse Genome Informatics Curator]
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Allelic Composition: Tmem79tm1.1(KOMP)Wtsi/Tmem79tm1.1(KOMP)Wtsi
Genetic Background: C57BL/6N-Tmem79tm1.1(KOMP)Wtsi/J

 MP:0011100 complete preweaning lethality "death of all organisms of a given genotype in a population between fertilization and weaning age (Mus: approximately 3-4 weeks of age)" [MGI:csmith]
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Allelic Composition: Usp22tm1b(KOMP)Wtsi/Usp22tm1b(KOMP)Wtsi
Genetic Background: C57BL/6N-Usp22tm1b(KOMP)Wtsi/Wtsi

  


Interacting proteins (from Reactome)
Interactor ID Name Interaction type
No match






 

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